Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2227
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 28 1.2
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 27 2.1
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 2.8
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 26 3.7
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 5.0
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 26 5.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 6.5
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.7
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 213 RLLETKSTAGSNITDTSKVVI--CLDLAASLYGTEFDVKQ-----AIKYSGLRPTVYANS 371
RL + +S N T ++ I CL+L +S ++ +K + Y +R Y NS
Sbjct: 107 RLCKAESQMDENGTFRNQFYIRFCLELLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNS 166
Query: 372 KKIISNRLE 398
KK+IS+ +E
Sbjct: 167 KKVISSLIE 175
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = -1
Query: 289 AKSKHITTLLVSVMLLPAVDFVSKSRSNSAAFLKTFSSSLIPSLEAMRCKVLLYFAIIAP 110
AK K++ LL VM ++ F+S + AAF + +I ++ V++ F + A
Sbjct: 482 AKPKNLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTVIIQF-LYAI 540
Query: 109 FILLSSTLK 83
ILLS+ L+
Sbjct: 541 AILLSTPLQ 549
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Frame = +3
Query: 111 GAIMAKYNKTLHLIASKLGIS-DEEKVLRKAAEFERLLETKSTAGSNITDTSKVVICLDL 287
G + +++ ++ + S +G++ +E+ + K + + N T+ V +C+
Sbjct: 172 GGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISE 231
Query: 288 AASLYGTEFDVKQAIKYSGLRPTVYANSKKIISNRLELDVDRLSVAVLCASLQNSGVQAL 467
SLY TE +++ Y ++ I+ N+L LD + + A
Sbjct: 232 FLSLYETERMIQELTSYE-------IDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQ 284
Query: 468 AEKILEQY 491
E++ E +
Sbjct: 285 IEELYEDF 292
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 277 HITTLLVSVMLLPAVDFVSKSRSNSAAFLKTFSSSLIPSLEAMRCKVLLYFAII 116
H + + V L+P ++ K++ A S + P L A RCK L ++I
Sbjct: 172 HENFVSIHVSLVPVINGEQKTKPTQQAIRDLRSLGITPDLIACRCKQPLEKSVI 225
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 286 KSKHITTLLVSVMLLPAVDFVSKSRSNSAAF 194
+SK I LLVSV L+P ++ NS F
Sbjct: 83 RSKPIDKLLVSVYLMPGPEWEENGEKNSIDF 113
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 316 SNSVPYKLAAKSKHITTLLVSVMLLPAVDF 227
+N+ KLAA++KHI T +++ L+ V F
Sbjct: 2 ANAAQKKLAAQNKHILTFMLAADLIVNVLF 31
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 186 VLRKAAEFERLLETKSTAGSNITDTSKVVICLDLAASLYGTE 311
VLR + F R+L +T GS+ KVV CL ++ + E
Sbjct: 252 VLRSNSHF-RVLGLTATPGSSTASVQKVVDCLHISKLIVRNE 292
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 268 LLYAWTWLLVCMVLNLMLSKQLSI 339
L AWTW+ C ++L K++SI
Sbjct: 246 LFTAWTWIKPCFFNFVILLKRISI 269
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 184 FSSSLIPSLEAMRCKVLLYFAIIAPFILLSSTLKNILYILEKFYD 50
F+ + I S+ M VL YF+ +A + + +L +L FYD
Sbjct: 754 FAITNISSVHKMPSFVLSYFSDLAASNRILTGFDRVLQLLPSFYD 798
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,549
Number of Sequences: 5004
Number of extensions: 43440
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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