Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2227
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1360 - 25991173-25991261,25991496-25991586,25992318-259924...    62   3e-10
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545...    29   2.9  
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159...    28   6.7  
11_04_0288 - 15802010-15803506                                         28   6.7  
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164...    28   6.7  
11_06_0145 - 20615044-20617167,20617444-20618076                       27   8.8  
07_03_0889 - 22316945-22317062,22317149-22318794                       27   8.8  

>07_03_1360 -
           25991173-25991261,25991496-25991586,25992318-25992409,
           25992586-25992673,25992826-25992888,25992975-25993086,
           25993255-25993335,25993437-25993541,25993652-25993698,
           25993793-25993912
          Length = 295

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
 Frame = +3

Query: 150 IASKLGISDEEKVLRKAAEFERLLE-TKSTAGSNITDTSKVVICLDLAASLYGTEFDVKQ 326
           IAS+LG+S    V+RKAAE  RL + T  ++   I +  K +ICL++AAS +   FD  +
Sbjct: 6   IASRLGLSGSRPVVRKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASKFQVIFDRAE 65

Query: 327 AIKYSGLRPTVYANSKKIISNRL----ELDVDRLSVAVLCASL 443
           A++ SG+    Y  S   + N L     LDV  L +   C  L
Sbjct: 66  AVRMSGMSEKAYIRSFNALQNGLGVKTTLDVRELGIQFGCVRL 108


>03_06_0220 +
           32452831-32452944,32453618-32453911,32454416-32454503,
           32454596-32454717,32454985-32455142,32455201-32455273,
           32455552-32455640,32455753-32455858,32455967-32456179,
           32456726-32456920,32457051-32457128,32457209-32457523
          Length = 614

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 318 VKQAIKYSGLRPTVYANSKKIISNRLELDVDRLSVAVLCASLQNSGVQALAE 473
           V +A+  SGLR   YA    ++   + LD+D+  +     +++ +G  A+++
Sbjct: 134 VLEALAASGLRSIRYAREIDVLEKVVALDIDKACIEACKRNIKFNGASAMSK 185


>12_01_0210 -
           1593732-1593823,1594730-1594773,1594895-1594983,
           1595076-1595120,1595457-1595564,1595647-1595732,
           1595872-1595959,1596159-1596335,1596531-1596606,
           1596709-1596758,1596834-1596896,1597152-1597254,
           1597337-1597439,1597559-1597619,1598119-1598159,
           1599790-1599961
          Length = 465

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 160 NLVSVTKKKF*GKQLSLNDS*KQNLRLAATLLIQVKLLYAWTWLLVCMVLNLMLSKQLSI 339
           +L +V+ +K+ G   S  D  +      A+LL    ++Y W    +  +++L ++  LSI
Sbjct: 285 SLWAVSDRKYGGLSFSSEDIGQVLAVAGASLLAYQLIIYHWVHKFLGPIISLRIASALSI 344

Query: 340 LV 345
           L+
Sbjct: 345 LI 346


>11_04_0288 - 15802010-15803506
          Length = 498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 378 IISNRLELDVDRLSVAVLCASLQNSG 455
           +I N  E+ +D+++ A LCASL++ G
Sbjct: 277 VIKNTYEVVIDKVAWATLCASLRSIG 302


>11_01_0209 -
           1642473-1642579,1642783-1642826,1642935-1643023,
           1643114-1643158,1643484-1643591,1643691-1643776,
           1643917-1644004,1644211-1644387,1644720-1644795,
           1644898-1644947,1645030-1645092,1645332-1645434,
           1645513-1645615,1645731-1645791,1646268-1646308,
           1646792-1646825
          Length = 424

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 160 NLVSVTKKKF*GKQLSLNDS*KQNLRLAATLLIQVKLLYAWTWLLVCMVLNLMLSKQLSI 339
           +L +V+ +K+ G   S  D  +      A+LL    + Y W    +  +++L ++  LSI
Sbjct: 239 SLWAVSDRKYGGLSFSSEDIGQVLAAAGASLLAYQLIFYHWVHKFLGPIISLRIASALSI 298

Query: 340 LV 345
           L+
Sbjct: 299 LI 300


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -2

Query: 402 PILVDLILFSC-CLHTLLASDQN 337
           P+L DL+LFSC  LH ++A+ Q+
Sbjct: 772 PLLEDLLLFSCSTLHQIIATAQD 794


>07_03_0889 - 22316945-22317062,22317149-22318794
          Length = 587

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 LIASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTSKVV 272
           L+++ + +SD     RK    E L   +  A +N+TD  K+V
Sbjct: 525 LLSTLMHLSDSTSGRRKIMSSEHLRNLERLAETNVTDAKKIV 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,298
Number of Sequences: 37544
Number of extensions: 221705
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)