Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2227
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    31   0.49 
AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   7.9  
U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    27   7.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   7.9  

>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 153  ASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTSK 266
            +SK   +D+EK+ R  AEFER  + K    S + +TS+
Sbjct: 1410 SSKKPKNDDEKIRRGIAEFERTKQEKEAQRSTVIETSQ 1447



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 174  DEEKVLRKAAEFERLLETKSTAGSNITDTSK 266
            D+EK+ R  AEFER  + K    S + +TS+
Sbjct: 1743 DDEKIRRGIAEFERTKQEKEAQRSAVIETSQ 1773



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 84   FNVEDSKINGAIMAKYNKTLHLIASKLGISDE--EKVLRKAAEFERLLETKSTAGSNITD 257
            ++V+      A+    +K     + +  +S+E  EK+ R  AEFER  + K    S + +
Sbjct: 1548 YSVKMENRTSAVSIDLDKVFDQSSKETTVSNETDEKIKRGIAEFERSKQEKEVQRSGVAE 1607

Query: 258  TS 263
            TS
Sbjct: 1608 TS 1609



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 174  DEEKVLRKAAEFERLLETKSTAGSNITDT 260
            D+EK+ R  AEFER  + K    S + +T
Sbjct: 2106 DDEKIRRGIAEFERTKQEKEAQRSTVIET 2134


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 153  ASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTSK 266
            +SK   +D+EK+ R  AEFER  + K    S + +TS+
Sbjct: 1410 SSKKPKNDDEKIRRGIAEFERTKQEKEAQRSTVIETSQ 1447



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 174  DEEKVLRKAAEFERLLETKSTAGSNITDTSK 266
            D+EK+ R  AEFER  + K    S + +TS+
Sbjct: 1743 DDEKIRRGIAEFERTKQEKEAQRSAVIETSQ 1773



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 84   FNVEDSKINGAIMAKYNKTLHLIASKLGISDE--EKVLRKAAEFERLLETKSTAGSNITD 257
            ++V+      A+    +K     + +  +S+E  EK+ R  AEFER  + K    S + +
Sbjct: 1548 YSVKMENRTSAVSIDLDKVFDQSSKETTVSNETDEKIKRGIAEFERSKQEKEVQRSGVAE 1607

Query: 258  TS 263
            TS
Sbjct: 1608 TS 1609



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 174  DEEKVLRKAAEFERLLETKSTAGSNITDT 260
            D+EK+ R  AEFER  + K    S + +T
Sbjct: 2106 DDEKIRRGIAEFERTKQEKEAQRSTVIET 2134


>AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical
           protein F44E7.5b protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +3

Query: 117 IMAKYNKTLHLIASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTSKVVICL 281
           ++  Y   LH+   K    DEEK  ++  +FE +L  K +          +  CL
Sbjct: 39  VIGHYEAHLHITLPKDECCDEEKCSKEKVQFEMILNRKGSYRRGRAHFHSIFTCL 93


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +3

Query: 117 IMAKYNKTLHLIASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTSKVVICL 281
           ++  Y   LH+   K    DEEK  ++  +FE +L  K +          +  CL
Sbjct: 39  VIGHYEAHLHITLPKDECCDEEKCSKEKVQFEMILNRKGSYRRGRAHFHSIFTCL 93


>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.8 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +1

Query: 262 VKLLYAWTWLLVCMVLNLMLSKQLSILV*GQQCMQTAR--K*YQID*NWMSIDSVLQFFV 435
           + +L +  WL VC++LN +L ++L  +   Q   Q ++  K  +I+ + +S+ +   FF 
Sbjct: 207 ITILNSAIWLTVCLILNWILYRKLRKIKLSQSISQLSQVGKSRKIEIS-LSLTTTAMFF- 264

Query: 436 LAYKTVVF 459
            AY T +F
Sbjct: 265 -AYTTNLF 271


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 87   NVEDSKINGAIMAKYNKTLHLIASKLG--ISDE-EKVLRKAAEFERLLETKSTAGSNITD 257
            +VE  K    I+ KY+     +  K G  + DE +K     +++  +LET+S  G + +D
Sbjct: 1073 SVEYGKAQQKILFKYDYWHKEMLVKFGAVVGDEMQKFFNSVSKWRNVLETQSVDGGSTSD 1132

Query: 258  T 260
            T
Sbjct: 1133 T 1133


>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 139 VLLYFAIIAPFILLSSTLKNILY 71
           V+ +F +IAP +++ STLK + Y
Sbjct: 30  VVTFFLLIAPIVMIMSTLKWLFY 52


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 87   NVEDSKINGAIMAKYNKTLHLIASKLG--ISDE-EKVLRKAAEFERLLETKSTAGSNITD 257
            +VE  K    I+ KY+     +  K G  + DE +K     +++  +LET+S  G + +D
Sbjct: 1073 SVEYGKAQQKILFKYDYWHKEMLVKFGAVVGDEMQKFFNSVSKWRNVLETQSVDGGSTSD 1132

Query: 258  T 260
            T
Sbjct: 1133 T 1133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,571
Number of Sequences: 27780
Number of extensions: 225715
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)