Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2223
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.7  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.0  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = -1

Query: 571 YLSVSFKRLLSNVSKTKLNWVNLLSYESMAFCQYIFSLIITVNRK*LA*FCQIDNFPYW* 392
           Y S S   L+SN+  +++ W+ L    +   C   F       RK +  F +   F YW 
Sbjct: 382 YESFSLHYLMSNIKISEIEWLVLGKRSNAKMCLSDFE-----KRKQI--FAE---FIYWL 431

Query: 391 INIMPLPL----YFVLFDIDMRFRTVFF 320
            N   +P+    +++    D+R RTV+F
Sbjct: 432 YNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 544 LSNVSKTKLNWVNLLSYESMAFCQYIFSLI 455
           + ++   K  W++L + +++AFC +  SL+
Sbjct: 318 IDSLENKKFYWIHLAAVKALAFCPWQKSLL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,527
Number of Sequences: 5004
Number of extensions: 48656
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)