Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2223
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216...    29   4.0  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    28   5.3  

>05_03_0294 + 11818391-11820268,11820332-11820550,11820752-11821644,
            11829889-11829905,11829927-11830183
          Length = 1087

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 45   MRNIISS-LKYTNFFSKCAKKVLKRFTIKYIY 137
            +RNI+S+    T  FSKC K  L  F++K +Y
Sbjct: 1038 LRNIVSTNFCLTIIFSKCVKDTLILFSLKAVY 1069


>06_03_1457 -
           30287185-30287287,30287691-30287759,30288212-30288351,
           30288447-30288641,30288743-30289363,30289688-30290257,
           30290332-30293638,30293764-30293863,30293978-30295014,
           30295256-30295604,30296299-30296374,30296456-30297022,
           30297094-30297238,30298281-30298405,30298491-30298582,
           30298646-30298828,30298946-30299058,30299499-30299649,
           30299720-30299882
          Length = 2701

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 595 KILSRFVLYLSVSFK-RLLSNVSKTKLNWVNLLSYESMAFCQYIFSL 458
           ++LS   L LSV  K  L S +SK  L+W+  +  ++   C + F +
Sbjct: 478 QVLSLLCLSLSVYPKTNLFSRISKQVLSWIPWICKQTTKICMFSFDV 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,749
Number of Sequences: 37544
Number of extensions: 239034
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)