Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2223
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-12|AAG24014.2|  195|Caenorhabditis elegans Hypothetical...    28   4.8  
Z92833-9|CAD54141.2|  665|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL023842-11|CAD54168.2|  665|Caenorhabditis elegans Hypothetical...    27   8.4  

>AF016447-12|AAG24014.2|  195|Caenorhabditis elegans Hypothetical
           protein C54F6.12 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 66  LKYTNFFSKCAKKVLKR 116
           L Y N FSKCAKK+++R
Sbjct: 104 LYYHNVFSKCAKKLMRR 120


>Z92833-9|CAD54141.2|  665|Caenorhabditis elegans Hypothetical
           protein F38A6.3d protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 287 IRQHAYLPTVTKKHCSESHVNVKQYKIQR*RHNVYLPIRKVVNLTELC 430
           +R+   L  + ++H    H       +QR  HNV L + +V NL + C
Sbjct: 551 VREVEQLDRLPRQHRPHCHTVPTTRHLQRASHNVDLTVPRVSNLDKSC 598


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 459 SEKIY*QKAIDS*LNRLTQFNLVLLTLDKSRLKETERYSTNLDRILF 599
           SEK++ ++   S  N    +NLV L+ DK  L   E Y T+ D +++
Sbjct: 554 SEKMFKRQVQLSLYNMFRSYNLVNLSADKEYLICLEWYLTDNDAVIY 600


>AL023842-11|CAD54168.2|  665|Caenorhabditis elegans Hypothetical
           protein F38A6.3d protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 287 IRQHAYLPTVTKKHCSESHVNVKQYKIQR*RHNVYLPIRKVVNLTELC 430
           +R+   L  + ++H    H       +QR  HNV L + +V NL + C
Sbjct: 551 VREVEQLDRLPRQHRPHCHTVPTTRHLQRASHNVDLTVPRVSNLDKSC 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,902
Number of Sequences: 27780
Number of extensions: 258856
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)