Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2222
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7YY56 Cluster: 41 Kd oocyst wall protein; n=5; Cryptos...    32   8.4  
UniRef50_A0BMA2 Cluster: Chromosome undetermined scaffold_116, w...    32   8.4  
UniRef50_Q9GYV5 Cluster: NF-kappa-B essential modulator; n=11; m...    32   8.4  

>UniRef50_Q7YY56 Cluster: 41 Kd oocyst wall protein; n=5;
            Cryptosporidium|Rep: 41 Kd oocyst wall protein -
            Cryptosporidium parvum
          Length = 3006

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 393  SLSLTPGCTANHSLETKNKF*IQKLSLSLNDLKANDVKLREVIENSIS*IQL 238
            S S TPG   N SL+  NK  +  ++ SLN L +  V + E I + +S I L
Sbjct: 2056 SSSSTPGFEVNQSLDLDNKIIMVPIATSLNGLSSISVPMNE-IRDEVSQIML 2106


>UniRef50_A0BMA2 Cluster: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 148

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 174 QKKNYINENMQKVYHNKASAVLTEFMRSSFQ*LREVLRRSLLNHLER--ERVFEFKTCSS 347
           +KKNY  E+++KV  NK +A + +   +SF+ + ++L    +  +    + + +F   S 
Sbjct: 77  KKKNYSREDIKKVLENKEAAAIAKKYFASFEIIEDILHSEKVPEITTLLKYIRKFFIASH 136

Query: 348 FP 353
           FP
Sbjct: 137 FP 138


>UniRef50_Q9GYV5 Cluster: NF-kappa-B essential modulator; n=11;
           melanogaster subgroup|Rep: NF-kappa-B essential
           modulator - Drosophila melanogaster (Fruit fly)
          Length = 387

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 13/33 (39%), Positives = 26/33 (78%)
 Frame = -3

Query: 360 HSLETKNKF*IQKLSLSLNDLKANDVKLREVIE 262
           ++ E+K++  I+K+ L +N+LKA D++ +EVI+
Sbjct: 236 YATESKSQELIKKMQLDINELKARDIQKQEVIK 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,953,130
Number of Sequences: 1657284
Number of extensions: 8090884
Number of successful extensions: 20606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20601
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)