Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2222
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   2.0  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   7.9  

>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 549 ITPIPRLSIPERH*LRIKKWCGHSLVAGGWDTSLDDRGKQKSRQQTL 409
           IT +P + + +R      +W GH  + GG  +  D    Q + ++TL
Sbjct: 55  ITSVPYVLLIQRSFRDTDRWSGHMALPGGTRSLTDKSDIQTAHRETL 101


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 407 VNVCCRDFCFPRSSSDVSHPPATRECPHHFFIRSQCLSGID 529
           +N CC+   +PR+ S +    A +  P+     S CL+  D
Sbjct: 3   LNACCKKNLWPRNGSTIFRRFALKLRPYQEECLSACLNAFD 43


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 443 SSSDVSHPPATRECPHHF---FIRSQCLSGIDN 532
           SSS VS PP T   P  F   FI S  LS I N
Sbjct: 685 SSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPN 717


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 YKSKLFQKKNYINENMQKVYHN 221
           Y +KL Q +  IN+N  +VYH+
Sbjct: 59  YDTKLEQIRQLINKNAPRVYHH 80


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 453 SLDDRGKQKSRQQTLTLDFYSLSLTPGCTANHSLETKNKF 334
           SLD R + ++R++   +++++L   P    N     KNKF
Sbjct: 180 SLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKF 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,286
Number of Sequences: 5004
Number of extensions: 36685
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)