Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2222
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262...    30   1.5  
07_03_0722 + 20946201-20947327,20949531-20950791                       28   6.1  

>03_06_0369 +
           33425251-33425778,33425864-33426051,33426152-33426251,
           33426366-33426578,33426616-33426822,33426908-33427095,
           33427234-33427492
          Length = 560

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 477 LVAGGWDTSLDDRGKQKSRQQ-TLTLDFYSLSLTPG 373
           L+   +  S+DD+GK+K ++Q T+ L F  + ++PG
Sbjct: 334 LIEPSYKISIDDQGKEKKKKQPTVMLVFLCIPVSPG 369


>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 564 NPPGKITPIPRLSIPERH*LRIKKWCGHSLVAGGWDTSLDDRGKQKSRQQTLTLDFYSLS 385
           NP   +T    + I  R  L ++  C    V   W   + DR  +K   QTL+  FY  S
Sbjct: 10  NPAASLTDDLVVEILRR--LPVRSVCRFKRVCRSWRNLIADREHRKKLPQTLSGFFYKSS 67

Query: 384 LTP--GCTANHSLETKNK 337
                 C+A+H      K
Sbjct: 68  SGERCPCSAHHFTNVSGK 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,802
Number of Sequences: 37544
Number of extensions: 213381
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)