Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2222
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48621-11|CAE17932.2|  212|Caenorhabditis elegans Hypothetical p...    27   7.2  
DQ016970-1|AAY42967.1|  212|Caenorhabditis elegans Rab GTPase GL...    27   7.2  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z48621-11|CAE17932.2|  212|Caenorhabditis elegans Hypothetical
           protein R07B1.12 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 300 NHLERERVFEFKTCSSFPVSDLQCSRELG*VSKSLKSMFAVVISASLGRQVTYPIPQLRG 479
           N L  +++++ +T + F  S    ++E   + ++ K +   VIS   G Q   P     G
Sbjct: 135 NKLGDDKLYDLETNNGFVGSFRTSAKESVGIEEAFKFLANTVISTEQGGQYDVPFMNREG 194

Query: 480 NVH 488
           NV+
Sbjct: 195 NVN 197


>DQ016970-1|AAY42967.1|  212|Caenorhabditis elegans Rab GTPase GLO-1
           protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 300 NHLERERVFEFKTCSSFPVSDLQCSRELG*VSKSLKSMFAVVISASLGRQVTYPIPQLRG 479
           N L  +++++ +T + F  S    ++E   + ++ K +   VIS   G Q   P     G
Sbjct: 135 NKLGDDKLYDLETNNGFVGSFRTSAKESVGIEEAFKFLANTVISTEQGGQYDVPFMNREG 194

Query: 480 NVH 488
           NV+
Sbjct: 195 NVN 197


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 573  KKPNPPGKITPIPRLSIP 520
            K+ +PPG IT IP+ S+P
Sbjct: 951  KQASPPGSITSIPKESLP 968


>U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A8.1b protein.
          Length = 642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 270 LREVLRRSLLNHLERERVFEFKTCSSFPVSDLQCSREL 383
           +RE+L+   L  LE +RVF +K  S  P+  L+  R +
Sbjct: 321 IREILKSLGLWKLEGDRVFPWKNRSQHPIRCLESVRPI 358


>U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical
           protein C06A8.1a protein.
          Length = 663

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 270 LREVLRRSLLNHLERERVFEFKTCSSFPVSDLQCSREL 383
           +RE+L+   L  LE +RVF +K  S  P+  L+  R +
Sbjct: 342 IREILKSLGLWKLEGDRVFPWKNRSQHPIRCLESVRPI 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,129,624
Number of Sequences: 27780
Number of extensions: 199618
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)