Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2222
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.94 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 280 TSRSY*KLDLINSVNTAEALLW 215
           T +SY K DL+ +VN A  + W
Sbjct: 112 TVQSYDKYDLLENVNNAARINW 133


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 210 PFACFR*YNFFFEIAYFYIIK*ICKLTLYVT 118
           P+A  +   FFF      ++  +C  T +VT
Sbjct: 141 PYAVTKSAMFFFAATSLLVVAEVCYFTAHVT 171


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 282 LRRSLLNHLERERVFEFKTCSSFPVSDLQC 371
           + R   N +  E  F  + CS FP + L C
Sbjct: 78  IERGPANRMYIEIKFTTRDCSLFPGNALSC 107


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 SKLFQKKNYINENMQKVYHN 221
           S L    NY N N +K+Y N
Sbjct: 83  SSLSNNYNYNNNNYKKLYCN 102


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 SKLFQKKNYINENMQKVYHN 221
           S L    NY N N +K+Y N
Sbjct: 83  SSLSNNYNYNNNNYKKLYCN 102


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 SKLFQKKNYINENMQKVYHN 221
           S L    NY N N +K+Y N
Sbjct: 83  SSLSNNYNYNNNNYKKLYCN 102


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 153 LYKSKLFQKKNYINENMQKVYHN 221
           L    +    NY N N +K+Y+N
Sbjct: 307 LSNKTIHNNNNYNNYNNKKLYYN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,496
Number of Sequences: 438
Number of extensions: 2706
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)