Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2219
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 33 0.24
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 32 0.32
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 32 0.32
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 30 1.7
07_03_0211 + 15239636-15241132 30 1.7
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 29 3.0
12_01_0473 + 3708770-3710026 29 3.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 5.2
10_08_0763 + 20415944-20416178,20416293-20416615 28 5.2
01_01_0223 + 1901898-1901983,1902079-1902154,1902256-1902308,190... 28 5.2
12_02_0970 + 24939345-24939416,24940689-24941054 28 6.8
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 28 6.8
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 28 6.8
04_04_1414 - 33394518-33394847 28 6.8
04_03_0250 - 13477020-13477550,13477572-13477933,13478026-134786... 28 6.8
09_02_0452 - 9498193-9498468 27 9.0
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 27 9.0
07_01_0479 + 3606663-3607448 27 9.0
06_03_0082 + 16363742-16364632 27 9.0
04_03_0062 - 10581175-10581879 27 9.0
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 27 9.0
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 611 KASRGPPPAPRGHIRGPGQLPPP 543
KAS PPPAP GH P + PP
Sbjct: 624 KASSPPPPAPEGHTPSPPESTPP 646
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 611 KASRGPPPAPRGHIRGPGQLPPP 543
KAS PPP P GH P + PP
Sbjct: 657 KASSPPPPTPEGHTPSPPKSTPP 679
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 611 KASRGPPPAPRGHIRGPGQLPPP 543
+AS PPPAP GH P + PP
Sbjct: 723 EASSPPPPAPEGHTPSPPKSSPP 745
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 611 KASRGPPPAPRGHIRGPGQLPPP 543
++S PPPAP GH+ P + PP
Sbjct: 690 ESSSPPPPAPEGHMPSPPKSTPP 712
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 608 ASRGPPPAPRGHIRGPGQLPPP 543
AS PPP P GH P + PP
Sbjct: 561 ASHSPPPVPEGHTPSPPKSGPP 582
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 605 SRGPPPAPRGHIRGPGQLPPP 543
SR PPP P H R P PPP
Sbjct: 66 SRAPPPPPSHHERAPSDAPPP 86
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -2
Query: 570 SGPGATSAAAFPFIAKRRRGKQHKLLGRPPALAFPEW 460
SGP A S P IA+ RGK + RPP A P W
Sbjct: 122 SGPAAPSLTVSPAIAELIRGKIGRAAPRPPRHAAPCW 158
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 350 QWRRGQRPAEFTPTDRGDVHEEMW 421
+WR GQRPA TP D G E W
Sbjct: 32 RWRGGQRPAA-TPADEGRSQEAAW 54
>07_03_0211 + 15239636-15241132
Length = 498
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 591 PRPPGAHSGPGATSAAAFPFIA 526
P PPG SG GATS F FIA
Sbjct: 133 PIPPGLMSGGGATSECLFGFIA 154
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 602 RGPPPAPRGHIRGPGQLPPPH 540
RGPPP P G + P PPPH
Sbjct: 10 RGPPPRPAGRAQRP---PPPH 27
>12_01_0473 + 3708770-3710026
Length = 418
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 612 EGFKGAAPRPPGAHSGPGATSAAAFPFIAKRRRGKQH-KLLGRPPALAFPEW*NERAFSN 436
+G G + A + P A AAA +AKR +H K+ GR + P R F
Sbjct: 77 QGSSGGGEKKVVAPTTPAAAGAAATTTLAKRPSKDRHTKVDGRGRRIRMPALCAARVFQL 136
Query: 435 FRALRHIS 412
R L H S
Sbjct: 137 TRELGHKS 144
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 617 PRKASRGPPPAPRGHIRGPGQLPPP 543
PR PPP P G GP PPP
Sbjct: 923 PRPPGAPPPPPPPGKPGGPPPPPPP 947
>10_08_0763 + 20415944-20416178,20416293-20416615
Length = 185
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 585 PPGAHSGPGATSAAAFPFIAKRRRGKQHKLLGRPP 481
PPG H G GA + A +RRRG + RPP
Sbjct: 19 PPGGHRGVGAHNDTAL----RRRRGGAGRSSSRPP 49
>01_01_0223 +
1901898-1901983,1902079-1902154,1902256-1902308,
1902400-1902887,1902983-1903143,1903234-1903531,
1903619-1903773
Length = 438
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 582 PGAHSGPGATSAAAFPFIAKRRRGKQHKLLGRPPALAFPEW 460
PG++ GP A PF+ + RG+ ++ PP L W
Sbjct: 210 PGSYDGPRIGEAMTEPFVVRDHRGELYR-KHYPPVLGDDVW 249
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 508 FTAPALCYEWKCGGGSCPGPRMCPRGAGGGPL 603
F P C+ + GG PG R RG GGG L
Sbjct: 14 FLDPRRCWGGQEEGGVAPGRRSRRRGRGGGVL 45
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 536 GNAAAEVAPGPECAPGGRGAAPL 604
G AAA +AP P A GG G PL
Sbjct: 17 GAAAAALAPWPRRAAGGGGGGPL 39
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 593 PPAPRGHIRGPGQLPPPHFHS*QSAGAV 510
PPA G ++ PG PPP ++GAV
Sbjct: 26 PPAADGSLKSPGLAPPPRRSLRLASGAV 53
>04_04_1414 - 33394518-33394847
Length = 109
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 541 CGGGSCPGPRMCPRGAGGG 597
CGG +C GP C G GGG
Sbjct: 78 CGGSACGGP-ACGGGGGGG 95
>04_03_0250 -
13477020-13477550,13477572-13477933,13478026-13478682,
13480142-13480232
Length = 546
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 410 RERHRGRSV*IPPDVDP-AATAFSDSLFAIGTNLLIGE 300
R RGR + PP D AAT S S+ A GTNL GE
Sbjct: 425 RAASRGRRMSPPPASDAEAATGGSASVPAAGTNLAEGE 462
>09_02_0452 - 9498193-9498468
Length = 91
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 442 KSALVLPFREGEGRRPPQELVLFTAPALCYEWKCGGGSCPGPRMC 576
++A P R G + PP AP L +W C + P R C
Sbjct: 12 QAATTRPRRHGLAKEPPLHRGA-AAPPLHVQWSCRATTAPRSRRC 55
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 614 RKASRGPPPAPRGHIRGPGQLPP 546
R G P +PR H+RG GQ P
Sbjct: 53 RGGGHGGPASPRHHLRGRGQAGP 75
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 599 GPPPAPRGHIRGPGQLPPP 543
GPPP P +RGP + PP
Sbjct: 200 GPPPPPGPFMRGPPPMGPP 218
>06_03_0082 + 16363742-16364632
Length = 296
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 487 PPQELVLFTAPALCYEWKCGGGSCPGPRMCPRGAG 591
PP +LV AP CGGGS PG G G
Sbjct: 37 PPGKLVDEMAPEGVASITCGGGSIPGGLFDATGTG 71
>04_03_0062 - 10581175-10581879
Length = 234
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 597 AAPRPPGAHSGPGATSAAAFPFIAKRRRGKQHKLLGRPP 481
AAP PP +G G+++AA A+R K+ G PP
Sbjct: 195 AAPVPPLGAAGAGSSTAAGASASAERIVMAAAKVFGSPP 233
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 602 RGPPPAPRGHIRGPGQLPPP 543
R PPP PR R P LPPP
Sbjct: 52 RRPPPTPRSRSRSP--LPPP 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,915
Number of Sequences: 37544
Number of extensions: 359762
Number of successful extensions: 1735
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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