Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2219
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   2.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   2.7  
AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p...    29   3.5  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical
           protein K07G5.1 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 608 ASRGPPPAPRGHIRGPGQLPPP 543
           AS  PPP P+ +  GPG  PPP
Sbjct: 931 ASDSPPPLPQRNRVGPGGAPPP 952


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 596 PPPAPRGHIRGPGQLPPP 543
           PPP PR    GPG  PPP
Sbjct: 349 PPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 596 PPPAPRGHIRGPGQLPPP 543
           PPP PR    GPG  PPP
Sbjct: 359 PPPPPRYPSAGPGMYPPP 376


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 596 PPPAPRGHIRGPGQLPPPHF 537
           PPP+ RG   G G  PPPHF
Sbjct: 783 PPPSFRGGRGGHGGPPPPHF 802


>AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p450
           family protein 35B1 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 106 LYRTIGNLNLRIDYFKSRSEP*TEGAQPNAGG 11
           LY  IGNL LR D     SEP TE   P + G
Sbjct: 503 LYLMIGNLILRYDIKPHGSEPSTEDKLPYSAG 534


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 617 PRKASRG--PPPAPRGHIRGPGQLPPPH 540
           P+  S G  PP AP+   + PG  PPPH
Sbjct: 23  PQFQSNGFPPPAAPQKPAQVPGGFPPPH 50


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = -3

Query: 596 PPPAPRGHIRGPG---QLPPPHF 537
           PPPA  GH   PG   Q PP HF
Sbjct: 114 PPPAHHGHFGPPGHHFQGPPQHF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,480
Number of Sequences: 27780
Number of extensions: 258166
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)