Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2217
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 316 1e-87
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 183 2e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 168 6e-43
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 130 1e-31
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 88 7e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 88 1e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 79 6e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 1e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.030
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.069
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.12
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.37
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.84
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.84
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 28 0.84
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 1.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 3.4
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.5
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 26 4.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 6.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 6.0
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 7.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 316 bits (776), Expect = 1e-87
Identities = 144/153 (94%), Positives = 148/153 (96%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 182
GDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDM
Sbjct: 23 GDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 82
Query: 183 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 362
EKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSL
Sbjct: 83 EKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSL 142
Query: 363 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 461
YASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI
Sbjct: 143 YASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI 175
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 500 LMKILPSAGSCFTTTAER 553
LMKIL G F+TTAER
Sbjct: 189 LMKILMERGYTFSTTAER 206
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 183 bits (445), Expect = 2e-47
Identities = 81/154 (52%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 182
GDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DM
Sbjct: 27 GDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDM 86
Query: 183 EKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 359
E+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+
Sbjct: 87 EEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLA 146
Query: 360 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 461
LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 147 LYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 168 bits (408), Expect = 6e-43
Identities = 77/154 (50%), Positives = 110/154 (71%), Gaps = 2/154 (1%)
Frame = +3
Query: 6 DDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 179
D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++
Sbjct: 22 DNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEE 81
Query: 180 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 359
M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLS
Sbjct: 82 MNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141
Query: 360 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 461
LYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 142 LYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 130 bits (314), Expect = 1e-31
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Frame = +3
Query: 87 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 263
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 264 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 419
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 420 TVPIYEGYALPHAI 461
+P+ EGY + +I
Sbjct: 193 IIPVAEGYVIGSSI 206
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 88.2 bits (209), Expect = 7e-19
Identities = 46/149 (30%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDD 179
G+ P+ VF ++V R R + + + + VG++ + G ++ + P E +++NWD
Sbjct: 42 GEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDL 97
Query: 180 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 359
ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S
Sbjct: 98 MEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFS 156
Query: 360 LYASGR--TTGIVLDSGDGVSHTVPIYEG 440
Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 157 FYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.8 bits (208), Expect = 1e-18
Identities = 51/149 (34%), Positives = 76/149 (51%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 182
G+D P+ V PS G + G + Y+ +S G + +K I +G V NWD
Sbjct: 29 GEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVT 80
Query: 183 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 362
+W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q +
Sbjct: 81 VDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAA 140
Query: 363 YASGRTTGIVLDSGDGVSHTVPIYEGYAL 449
+ASG+ T ++D G S IY+G+ L
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 78.6 bits (185), Expect = 6e-16
Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWD 176
G+++P + PS + GV + ++ YV DE Q I + +K +GI+ +W+
Sbjct: 28 GEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWE 81
Query: 177 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 356
W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV
Sbjct: 82 STLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVC 141
Query: 357 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 461
+A+ ++T +++D G + P+ +G + I
Sbjct: 142 VAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 144 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 311
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 312 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 440
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.030
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 328 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPS 462
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 32.7 bits (71), Expect = 0.039
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +1
Query: 319 TRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVATS 492
++P TSP+ P +R P VP +S P P P PS P PS P+ TS
Sbjct: 997 SKPVSTSPAAPLARV--PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTS 1048
Score = 28.7 bits (61), Expect = 0.64
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 325 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHFPTPS 462
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 325 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHFPTPS 462
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 325 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHFPTPS 462
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.069
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 204 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 347
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 3 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 146
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.37
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 349 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFP 453
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.84
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 111 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 22
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.84
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 304 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHFPTPSCVWT*P 480
C+ ++ PP T S S P VPP S T + PT ST P P+ +
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230
Query: 481 VATSQTT 501
+TS T
Sbjct: 231 TSTSIPT 237
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = +1
Query: 304 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PV 483
C+ ++ PP T S S P VPP S T +T P P ST T + T
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171
Query: 484 ATSQTTYEDPPERG 525
T+ T+ PP G
Sbjct: 172 CTTSTSI--PPTGG 183
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 307 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVA 486
S ++ P S S C+ T +PP T V+PT P++ T T +C + V
Sbjct: 378 STGTSSSPLLSTSTSCTTSTS--IPPTGNST-TPVTPTVPPTSSSTPLTTTNCTTSTSVP 434
Query: 487 TSQTTYEDPP 516
+ T P
Sbjct: 435 YTSTPVTSTP 444
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 307 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVA 486
S ST PP S S + + + SC T ++ PT +T T P+ T
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT 424
Query: 487 TSQTTYEDPP 516
T+ TT P
Sbjct: 425 TNCTTSTSVP 434
Score = 25.4 bits (53), Expect = 6.0
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +1
Query: 307 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVA 486
S ST PP S S + + SC T ++ PT +T T PT P +
Sbjct: 311 SSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT--PTVP-----PTS 363
Query: 487 TSQTTYEDPP 516
TS T+ PP
Sbjct: 364 TSSTSTPPPP 373
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/70 (28%), Positives = 25/70 (35%)
Frame = +1
Query: 307 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVA 486
S ++ P S S C+ T +PP T P ST T P P P +
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP------PAS 375
Query: 487 TSQTTYEDPP 516
TS T P
Sbjct: 376 TSSTGTSSSP 385
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.3 bits (60), Expect = 0.84
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 346 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVATSQTTYEDPPERG 525
KP S+ TRP +P + T +V P P P + T ++ P +S + E PE
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIPPPSEQSLDT--IIYRNPSVSSSQSQE--PEEF 119
Query: 526 FL 531
FL
Sbjct: 120 FL 121
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 358 RCTRPVVPPVSCWTPATVSP-TPCPSTKDTHFPTPSCVWT*PVATSQTTYEDP 513
R P P V + A SP TP P K+T P+ S P ATS P
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHP 552
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 349 PCSRCTRPVVPPVSCWTPATVSPTPCPST 435
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 325 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 432
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 246 LLTEAPLNPKANREKMTQIMFETFN 320
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 331 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHFPTPSCVWT*PVATSQTT 501
C +PS+ C + PV + T S TP P+T + PTP+ T T+Q+T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 365 RVRSYHRYRAGLRRRCLPHRAHLRRIRTSPRHPASGLNRSRPHR 496
R RS HR+ G RR P+R HL R RH + + R R
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSR---HHRHSTTNYHSKRDDR 180
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 329 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTSPR 457
+VR HP A+ +R H Y +G C+ ++ R+ +P+
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPK 290
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 140 FEGQDTSFALCLISYIRVLLSHTDHHA 60
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 260 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 409
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 17 SRRVPLDRGKAPPSGRDGRYGTEGLLCRR*GTEQKRYPDPQIPHR 151
S +VP R PP R +Y E G Q+ + P++ +R
Sbjct: 207 SLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNR 251
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 452 GKCVSFVDGHGVGDTVAGV 396
GK +F+ G G G T+AG+
Sbjct: 218 GKLDAFIAGSGTGGTIAGI 236
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 364 TRPVVPPVSCWTPATVSPTPCPSTKDT 444
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 63 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 149
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,044
Number of Sequences: 5004
Number of extensions: 59439
Number of successful extensions: 199
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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