Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2216
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   3.9  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    26   3.9  
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.1  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   6.8  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.0  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.0  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 469 FVNNGHRKDILQKISFKNIMEYFAHQKS 386
           F++NGH+KD L+  + ++  E   H ++
Sbjct: 80  FISNGHQKDTLENPAIESSYEESEHARN 107


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 32  HPPNQYIKKDNTSRITTHDLSSVVASTLRYPWPLVTAD*VEENQPHS 172
           HP +Q    DN+S+ +  + S   +ST R P P  T+  V   +PHS
Sbjct: 398 HPSSQ----DNSSKASLVENSQTQSSTPRKPLPTTTSPKVNP-EPHS 439


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 445 PFYAHY*QNTQPFLYIVGRN 504
           P + HY QNTQ  +++V  N
Sbjct: 76  PLWRHYFQNTQGIIFVVDSN 95


>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 429 IF*RISFLCPLLTKYSAVLVHCWSQF 506
           IF ++  LCP    YS + ++C+  +
Sbjct: 66  IFRKLKILCPSFLNYSFINIYCFGPY 91


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 278 SMTIYYR*SNTG*YNNINYIRMLLVFWVPLP*WVLSRFLVSKIFHY 415
           S+++  +  N    +NIN I  +L F V L       FL+ K F Y
Sbjct: 270 SLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEY 315


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 161 QPHSPHTQGRLKLGWGPWAHKNLRP 235
           +P      G+L   W  W H+NL P
Sbjct: 173 KPKDEEPYGKLNPKWTKWFHRNLFP 197


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 172 AVRLVLFNLICCYQRPWISQCA 107
           A+ ++L NL CC + PW   C+
Sbjct: 224 ALGIILINL-CCKRNPWKRACS 244


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 41  NQYIKKDNTSRITTHDLSSVVASTLRYPWPLVTAD*VEENQPHSPHTQGRLKL 199
           +++ +     ++ + D SS+ +STL    P+V ++  EE    S  T   + L
Sbjct: 99  SKFQRNSRIKKLQSEDASSIASSTLSMGEPVVDSEIEEEEDLASQLTSRAISL 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,073
Number of Sequences: 5004
Number of extensions: 43751
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)