Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2216
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361...    29   2.2  
08_02_1149 + 24706429-24708105                                         28   5.2  
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532...    27   6.8  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    27   6.8  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    27   9.0  

>10_01_0002 -
           34139-34234,34337-34345,34806-35048,35931-36003,
           36184-36265,36398-36580,36663-36702,36814-36886,
           37022-37290
          Length = 355

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 501 ATNNVQERLSILSIMGIERISFKKFLLKI*WNILL-TRNLERTHYGNGTQKT 349
           AT    E   +++ +G  RI F  FLL + W +L   R  E    G+G   T
Sbjct: 189 ATAAKVEHFILVTSLGTNRIGFPAFLLNLFWGVLCWKRRAEEALIGSGLPYT 240


>08_02_1149 + 24706429-24708105
          Length = 558

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 446 GYPSKNFF*KYNGIFCSPEILKEPIMVMV 360
           G P K+FF + NG F SPE+ +   ++M+
Sbjct: 121 GSPVKSFFHRLNGGFYSPEVSQARELLMI 149


>10_06_0141 -
           11151344-11151531,11151926-11152275,11153119-11153274,
           11153505-11153674,11155431-11155589,11157139-11157447,
           11157550-11157750
          Length = 510

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 185 GRLKLGWGPWAHKNLRPFWKIK 250
           GR   GW  W +KN+   W ++
Sbjct: 477 GRATFGWAYWTYKNVNNHWSMQ 498


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = -3

Query: 247 YFPKGPQ---ILVCPRAPA*FKTSLGMRAVRLVLF-NLIC 140
           Y P+ PQ   ++VC R+    +T L +RAVR+ LF N +C
Sbjct: 45  YVPRNPQFRALVVCWRS----RTHLALRAVRIGLFVNCVC 80


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 271 KNIIIRFFYFPKGPQILVCP 212
           +++ I+ F+ PKG +I++CP
Sbjct: 286 EDVHIKGFFIPKGSKIMICP 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,261
Number of Sequences: 37544
Number of extensions: 260229
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)