Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2216
         (519 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    29   7.4  
BC007453-1|AAH07453.2|  548|Homo sapiens SMG5 protein protein.         29   7.4  
AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protei...    29   7.4  
AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B pr...    29   7.4  
AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    29   7.4  
AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense...    29   7.4  
AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.                29   7.4  
AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.     29   7.4  

>BC038296-1|AAH38296.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>BC007453-1|AAH07453.2|  548|Homo sapiens SMG5 protein protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 247 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 283


>AY336728-1|AAQ84301.1| 1016|Homo sapiens LPTS interacting protein
           protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>AY168922-1|AAO17582.1| 1016|Homo sapiens Est1p-like protein B
           protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>AL589685-2|CAI14160.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>AL135927-6|CAI15525.1| 1016|Homo sapiens Smg-5 homolog, nonsense
           mediated mRNA decay factor (C. elegans) protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>AB085691-1|BAC53623.1| 1016|Homo sapiens SMG-5 protein.
          Length = 1016

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 715 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 751


>AB029012-1|BAA83041.2| 1033|Homo sapiens KIAA1089 protein protein.
          Length = 1033

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 176 EGCEVGSLQPNLLLPEAMDIAMCLPPRCLNHEL*FST 66
           EGCE+  L  +LLLPE M +    P R  +    F T
Sbjct: 732 EGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDT 768


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,998,127
Number of Sequences: 237096
Number of extensions: 1603721
Number of successful extensions: 3083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)