Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2214
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   5.9  

>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 59  KLCNSLT-TKRCN*HDV*ILKQCYIFSYVAQCF 154
           KL  +++ T++C  +++ +    ++F Y+  CF
Sbjct: 57  KLTEAISFTEKCEKYNISLFDSTFVFGYIVNCF 89


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 193 MSVSCYNTATDTIKTLSYI*KYVALF*NLNV 101
           +S   YNT+ D IK +S I K +AL   LN+
Sbjct: 364 VSFGLYNTSKDIIKFISVIRKGLALNIPLNI 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,589
Number of Sequences: 5004
Number of extensions: 47524
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)