Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2214
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 439 NPIIYLAGYVRDRN 480
           NPI+Y A  +RDRN
Sbjct: 312 NPIVYGAFNIRDRN 325


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 254 MSPNYNDLTMRNPVPKSQHQRKNKNN*N 337
           +  N NDL M      S +Q  N+N  N
Sbjct: 570 LGANVNDLIMNTRCANSDNQNNNQNKHN 597


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 296 PKSQHQRKNKNN*NTKPHDLLRT 364
           PK+Q+  KN+NN +   H  LRT
Sbjct: 111 PKNQY--KNQNNNHYTSHQHLRT 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,719
Number of Sequences: 438
Number of extensions: 3803
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)