Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2213
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.92 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 478 DIDYDNNKTTVDKSTFDDDVSQTTRRVTKV 567
           ++  +N KTT D +TF   V  +T+R T++
Sbjct: 437 NVQIENLKTTPDNTTFITLVDVSTKRRTEL 466


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +2

Query: 83  HRSQTRAETKSSTVHRSNESFSPKVTRHPDSARDIVDSQRHAD--DYDFKKQISTYVD 250
           H S T      S   RS+ +F P + R P+      +   HA   DYD    + T +D
Sbjct: 170 HNSGTHFWHSHSGFQRSDGTFGPFIVRVPE------EDNPHAKLYDYDLSSHVITILD 221


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 169 RVASNLRRKRFVRSVNSA*LSLRSGL 92
           RV +N+R ++  +S+N A  SLR  +
Sbjct: 98  RVMANVRERQRTQSLNEAFASLRKSI 123


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 359 TKVNKTIIDSKVENDYSQIQRNEKVDRNL 445
           +K     + S+++ + ++   N+K+DRNL
Sbjct: 79  SKGTTLFMTSQIKKNVTRAYCNKKIDRNL 107


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 359 TKVNKTIIDSKVENDYSQIQRNEKVDRNL 445
           +K     + S+++ + ++   N+K+DRNL
Sbjct: 79  SKGTTLFMTSQIKKNVTRAYCNKKIDRNL 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,000
Number of Sequences: 336
Number of extensions: 2707
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)