Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2213
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 0.14
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 31 0.18
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 30 0.32
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.98
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.7
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.0
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.2
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 5.2
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 6.9
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.1
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 9.1
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha... 25 9.1
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/96 (18%), Positives = 38/96 (39%)
Frame = +2
Query: 152 KVTRHPDSARDIVDSQRHADDYDFKKQISTYVDNDDYSETQSIRNRETNVSSKIDRNTDD 331
K +H ++ + ++ D K D DDY + + + + N S + + D
Sbjct: 7 KRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELD 66
Query: 332 NYSRTSRYETKVNKTIIDSKVENDYSQIQRNEKVDR 439
N + R + VN + +S +Q +E + +
Sbjct: 67 NENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQK 102
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 30.7 bits (66), Expect = 0.18
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 5/170 (2%)
Frame = +2
Query: 14 QTGQGSRALAENLELQCRSTRSEHRSQTRAETKSSTVHRSNESFSPKVTRHPDSARDIVD 193
Q +G A E+L Q ++T ++H + +K + + S + +S +
Sbjct: 748 QPTEGQHARQESLPSQ-QTTETKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ---- 802
Query: 194 SQRHADDYDFKKQISTYVDND---DYSETQSIRNRETNVSSKIDRNTDDNYSRTSRYETK 364
S +H + +K I + V + SE + + +S++ RNTDD ++ + E
Sbjct: 803 STQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEAS 862
Query: 365 V--NKTIIDSKVENDYSQIQRNEKVDRNL*IVQKPKNSTRISTMIIIRQL 508
+ N + +KV ND +K + + K S TM + +Q+
Sbjct: 863 IPDNASTASTKVSNDSHLKPDADKKSVSSELTHASKPSLDEKTMQLAKQI 912
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 284 NRETNVSSKIDRNTDDNYSRTSRYETKVNKTIIDSKVENDYSQIQRNEKVD 436
N + ++ + D ++DD R SR+++ NK I+ + V + + K+D
Sbjct: 293 NEDFDLETSEDDSSDDATERASRFKSWANKQILGADVGEKSHDVAPDNKID 343
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 28.3 bits (60), Expect = 0.98
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Frame = +2
Query: 53 ELQCRSTRSEHRSQTRAETKSSTVHRSNESFSPKV----TRHPDSARDIVDSQRHADDYD 220
E+ RST S+ + + + K T+H NE K+ R D D + +ADD +
Sbjct: 135 EVTSRSTSSQEKDELEKQVK--TLHDLNEQKDKKIKELKERINDLTYDYETLKANADDSE 192
Query: 221 FKKQISTYVDN--DDYSETQSIRNRETNVSS-KIDRNTDDNYSRTSRYETKVNKTIIDSK 391
K+ + + + +++ IR E N K++ DD R E ++ K K
Sbjct: 193 GKQTLVSKREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLLKVEEHEK 252
Query: 392 VEND 403
N+
Sbjct: 253 SLNE 256
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 1.7
Identities = 27/127 (21%), Positives = 51/127 (40%)
Frame = +2
Query: 29 SRALAENLELQCRSTRSEHRSQTRAETKSSTVHRSNESFSPKVTRHPDSARDIVDSQRHA 208
S + +E + S+ SE S + SS+ S++S S + DS+ DS+ +
Sbjct: 209 SESSSEGSDSSSSSSSSESESSSEDNDSSSS---SSDSESESSSEDSDSSSSSSDSESES 265
Query: 209 DDYDFKKQISTYVDNDDYSETQSIRNRETNVSSKIDRNTDDNYSRTSRYETKVNKTIIDS 388
D ++ DD S S + E+ SS+ +T + S ++ + D+
Sbjct: 266 SSKDSDSSSNSSDSEDDSSSDSS--DSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDT 323
Query: 389 KVENDYS 409
+ S
Sbjct: 324 TTSGEVS 330
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +2
Query: 173 SARDIVDSQRHADDYDFKKQISTYVDNDDYSETQSIRNRETNVSSKIDRNTDDNYSRTSR 352
S D+ +++ + YD + + + ++T++IR +SKI T D + +
Sbjct: 62 SESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAASKILIETLDLHQKEGF 121
Query: 353 YETKVNKTIIDS 388
ET V + D+
Sbjct: 122 EETIVTEEATDA 133
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 143 FSPKVTRHPDSARDIVD 193
FSP + R PD++RD++D
Sbjct: 897 FSPTLIRDPDNSRDVID 913
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 281 RNRETNVSSKIDRNTDDNYSRTSRYETKVNKTIIDSKVEN 400
R +TN+ ++ RN DD+ ++ + E + K I+ + +N
Sbjct: 1391 RGNKTNLKARNGRNNDDSSNKINLSEKEKEKESIEDEEKN 1430
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 13 PDGTRLTSTRREFRAPVQEYSLRAPLSD 96
PD T + STR +A V ++ R P +D
Sbjct: 1081 PDATAMESTRCNCKAIVYQFFFRVPYTD 1108
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 5.2
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +2
Query: 110 KSSTVHR---SNESFSPKVTRHPDSARDIVDSQRHADDY---DFKKQISTYVDNDDYSET 271
KSSTVH SN+S P + DS DS +A+ D K ++S YS+
Sbjct: 360 KSSTVHEPPSSNDSH-PLLQLFKDSKISDDDSPSNAEGASTEDSKGEVS-------YSQI 411
Query: 272 QSIRNRETNVSSKIDRNTDDNYSRTSRYETKVNKTIIDSKVENDYS 409
+ +N+SSK + + Y+ V +T +SK +D S
Sbjct: 412 ELPSLDSSNLSSKKSTIQSKHTKQAEDYDLFVGRTRSNSKTSSDQS 457
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 320 NTDDNYSRTSRYETKVNKTIIDSKVENDYS 409
++DD + YE VN+T+ ++ +E ++S
Sbjct: 231 SSDDEMDSENDYEAMVNRTVAENGLEIEFS 260
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 62 CRSTRSEHRSQTRAETKSSTVHRSNESFSPKVTRHPDSARDIVDSQRHADDYDFKKQIST 241
C++ + H+ ++ S+ V RSN S K R P V + + KK I+T
Sbjct: 19 CKNQSTVHQKVNKSLGNSNKVLRSNAVQSDKANREPRRITKSVKKKENNTISAVKKVITT 78
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = +1
Query: 493 NNKTTVDKSTFDDDVSQTTRRVTKVNSKSN 582
NN+T+ +ST++ ++ R +++++SK++
Sbjct: 379 NNRTSEIRSTYESLIAALAREISQLDSKAS 408
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Frame = +1
Query: 487 YDNNKTTVDKST---FDDDVSQ 543
+DNNK T+D +T FD+DV +
Sbjct: 189 WDNNKITIDGATSMSFDEDVEK 210
>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 439 KSIDRSKTEEFDQDIDYDNNK---TTVDKSTFDDDVSQT 546
+ +D ++D+D D+DN + D+S F DD +T
Sbjct: 51 RDLDYEDLGDYDEDADFDNEEGLNVLGDESGFVDDPMKT 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,620
Number of Sequences: 5004
Number of extensions: 46241
Number of successful extensions: 216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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