Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2210
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 347 7e-97
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 188 5e-49
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 186 3e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 146 3e-36
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 89 5e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 2e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 81 9e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 67 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 4e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.073
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.39
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.6
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 3.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.8
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 4.8
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 6.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 6.3
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 6.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 347 bits (853), Expect = 7e-97
Identities = 164/183 (89%), Positives = 169/183 (92%)
Frame = +3
Query: 3 RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH 182
RAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWH
Sbjct: 28 RAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWH 87
Query: 183 HTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR 362
HTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGR
Sbjct: 88 HTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGR 147
Query: 363 TTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERRYFVHFTTPPN 542
TTGIVLDSGDGV HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ER Y F+T
Sbjct: 148 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGY--TFSTTAE 205
Query: 543 REI 551
REI
Sbjct: 206 REI 208
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 188 bits (458), Expect = 5e-49
Identities = 84/163 (51%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Frame = +3
Query: 3 RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH 182
+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW
Sbjct: 32 KCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWS 91
Query: 183 HTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 359
+ + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS
Sbjct: 92 YIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASA 151
Query: 360 RTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDLTDYL 488
RTTGIVL+ GDG+ H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 152 RTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 186 bits (452), Expect = 3e-48
Identities = 87/173 (50%), Positives = 122/173 (70%), Gaps = 2/173 (1%)
Frame = +3
Query: 3 RAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 176
R FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++
Sbjct: 26 RFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQL 85
Query: 177 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 356
W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA
Sbjct: 86 WDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQ 145
Query: 357 GRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERRY 515
G ++G+V+DSGDGV H VP+YE L H + RLD+AGRD T YL+ +L + Y
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGY 198
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 146 bits (353), Expect = 3e-36
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 9/155 (5%)
Frame = +3
Query: 72 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 248
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 249 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVFH 404
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 405 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 509
+P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 89.0 bits (211), Expect = 5e-19
Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Frame = +3
Query: 3 RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIW 179
+ VF ++V R R + + + + VG++ + G ++ + P E +++NWD ME++
Sbjct: 47 KLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVL 102
Query: 180 HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 359
+TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S Y +
Sbjct: 103 DYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNT 161
Query: 360 R--TTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 497
+ ++GIVL+ G+ H +P+ G + R+ G + YL+K+
Sbjct: 162 KPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.0 bits (206), Expect = 2e-18
Identities = 44/136 (32%), Positives = 69/136 (50%)
Frame = +3
Query: 114 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 293
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 294 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRD 473
E+ PA Y+A Q + +ASG+ T ++D G IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 474 LTDYLMKILTERRYFV 521
+ D L + L ++ + V
Sbjct: 183 INDILAQTLRDKNFEV 198
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 81.4 bits (192), Expect = 9e-17
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Frame = +3
Query: 33 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 206
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 207 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 386
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 387 GDGVFHTVPIYEGYALPHAILRLDLAG 467
G P+ +G + I + LAG
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 66.9 bits (156), Expect = 2e-12
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = +3
Query: 129 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 296
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 297 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHAILRLDLAGRDL 476
P +A + ++ LYA G G+V+D G PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 477 TDYLMKILTE 506
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 49.2 bits (112), Expect = 4e-07
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Frame = +3
Query: 78 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 245
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 246 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 383
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 384 SGDGVFHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERRY 515
SG H +P+ + A+ R+D+ G+ LT+YL ++++ R+Y
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKY 206
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.3 bits (80), Expect = 0.003
Identities = 28/144 (19%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Frame = +3
Query: 120 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 263
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 264 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVFHTVPIYEGYALPHA 443
EK+ I+F + + +++ + + +G + V+D G + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 444 ILRLDLAGRDLTDYLMKILTERRY 515
++++ G D+T MK+L +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHF 341
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.073
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 189 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 332
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +1
Query: 289 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPV 468
C+ ++ PP T S S P VPP S T +T S P P T + T S P
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSST--SIPIPPTSTSSTDTNSS--PLPT 224
Query: 469 VTSQTTS*RSLPSAGTSFTLPP 534
++ T+ S+P+ G+S P
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTP 246
Score = 29.9 bits (64), Expect = 0.29
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = +1
Query: 292 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPVV 471
S ST PP S S + + + SC T ++ T +T T P+ T P+
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST-PLT 423
Query: 472 TSQTTS*RSLPSAGTSFTLPPRRT 543
T+ T+ S+P T T P T
Sbjct: 424 TTNCTTSTSVPYTSTPVTSTPLAT 447
Score = 28.7 bits (61), Expect = 0.68
Identities = 26/80 (32%), Positives = 36/80 (45%)
Frame = +1
Query: 289 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPV 468
C+ ++ PP T S S P VPP S T +T S P P T + T S P
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSST--SIPIPPTSTSSTDTNSN--PLPT 167
Query: 469 VTSQTTS*RSLPSAGTSFTL 528
++ T+ S+P G S +L
Sbjct: 168 TSTSCTTSTSIPPTGGSSSL 187
Score = 28.7 bits (61), Expect = 0.68
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 298 HSTRP--PCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPVV 471
+ST P P P+ S T P PP S + T SS+P PST + + S T
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPP--PPASTSSTGT-SSSPLPSTSTSCTTSTSIPPTGNST 352
Query: 472 TSQTTS*RSLPSAGTSFTLPPRRT 543
T T + ++ TS PP T
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPAST 376
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 313 PCTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPS 447
P T+P P T PV P S P+ P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 316 CTSPSKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPVVTSQTT 486
C +PS+ C + PV + T S TP P+T + PTP+ T T+Q+T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 96 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 10
+ L+ K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 231 LLTEAPLNPKANREKMTQIMFETFN 305
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 382 TPATVSSTPCPSTRDTHFPTPSCVWTWPVVTSQTTS*RSLP 504
T V S P T + P P+ ++T V T+ T S S P
Sbjct: 953 TTLAVGSGTIPGTVEVILPAPTTIYTGTVATTITYSSSSTP 993
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 125 FEGQDTSFALCLISYIRVLLSHTDHHA 45
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 301 STRPPCTSP-SKPCSRCTRPVVPPVSCWTPATVSSTPCPSTRD--THFPTPS 447
S+RPP S S P T P+ PPV S+TP S D T +P S
Sbjct: 170 SSRPPVLSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYPINS 221
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = -1
Query: 557 ETNFPVRRGGKVNEVPALGKDLHEVVCEVTTGQVQTQDGVGKCVSLVDGHGVEDTVAGVQ 378
E++F V G VN ++ ++ GQ + G G G G DTV
Sbjct: 91 ESSFSVIDRGSVNRTRTSARNGGTLLKVRGRGQNVQRGGRGGRYGSSGGRGAGDTVVSRS 150
Query: 377 HDTGGTTGR 351
GG GR
Sbjct: 151 SGAGGARGR 159
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 245 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 394
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 382 TPATVSSTPCPSTRDTHFPTPSCVWTWPVVTSQTTS*RSLPSAGTSFTLP 531
T AT S T P T + P PS +++ V T+ T S P A T +P
Sbjct: 342 TLATASGT-VPGTVEVILPGPSTIYSGTVATTITYDVSSTP-ASTVVVIP 389
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 334 PCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFP 438
PC+ + PPV+C TP C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 331 KPCSRCTRPVVPPVSCWTPATVSSTPCPSTRDTHFPTPSCVWTWPVVTS 477
KP S+ TRP +P +T T S P P + + ++ P V+S
Sbjct: 65 KPSSKATRPYIP---SYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSS 110
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 48 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 134
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,657
Number of Sequences: 5004
Number of extensions: 62753
Number of successful extensions: 227
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -