Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2210
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 201  LRVAPEEHPVLLTEAPLNPKANREKM 278
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 474 LTDYLMKILTERRYFVHFTTPPNRE 548
           L ++L+K+L +R Y   +    NRE
Sbjct: 460 LWEFLLKLLQDREYCPRYIKWTNRE 484


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 344 AVRVRSYHRYRAGLRRRCLPHRAHLRGIRTSPRHP 448
           ++  +++HR        C P   +L  I + P HP
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 FHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 497
           FH +  +  +A+  +IL       + TDY M I
Sbjct: 393 FHPMSSFREFAVSTSILGDKKTAEENTDYFMPI 425


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 476 EVTTGQVQTQDGVGKCVS 423
           +++TG+V+   GVGK  S
Sbjct: 819 DLSTGKVEMITGVGKATS 836


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,873
Number of Sequences: 438
Number of extensions: 4832
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)