Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2209
         (410 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.004
UniRef50_Q5BIE5 Cluster: RE40185p; n=2; Drosophila melanogaster|...    33   2.3  
UniRef50_Q5V053 Cluster: Cytochrome B subunit of nitric oxide re...    33   2.3  
UniRef50_Q7RST7 Cluster: Streptococcus pyogenes AMV258; n=5; Pla...    32   5.2  
UniRef50_Q9X0X5 Cluster: Phosphoribosylglycinamide formyltransfe...    31   6.9  
UniRef50_Q5L1Y7 Cluster: Nitric oxide reductase cytochrome b sub...    31   6.9  
UniRef50_Q05FT5 Cluster: Putative replicative DNA helicase; n=1;...    31   6.9  
UniRef50_A0D955 Cluster: Chromosome undetermined scaffold_41, wh...    31   6.9  
UniRef50_Q62CR6 Cluster: Nitric oxide reductase; n=21; Proteobac...    31   9.1  
UniRef50_Q23Q07 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 42.3 bits (95), Expect = 0.004
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 1   FFLLRWVDELTAHLVLSGY 57
           F LLRWVDELTAHLVLSGY
Sbjct: 154 FLLLRWVDELTAHLVLSGY 172


>UniRef50_Q5BIE5 Cluster: RE40185p; n=2; Drosophila
           melanogaster|Rep: RE40185p - Drosophila melanogaster
           (Fruit fly)
          Length = 392

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 278 SSFFIVLVDRRVYGPLDGKKLPSPMDRQQMPEAESSRCLPVSSH 409
           SS F+V V   V   L   + PSP     +P+ +S R LP+++H
Sbjct: 36  SSLFVVCVASLVATTLGRPEPPSPYSYHGLPQQQSQRALPLNAH 79


>UniRef50_Q5V053 Cluster: Cytochrome B subunit of nitric oxide
           reductase; n=1; Haloarcula marismortui|Rep: Cytochrome B
           subunit of nitric oxide reductase - Haloarcula
           marismortui (Halobacterium marismortui)
          Length = 760

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 194 TSRYRIKPEKYVTLSNYW--WIVNLYMEGPSSFFIVLV 301
           T+ +   PE  + ++ +W  W+V++++EG   FFIV +
Sbjct: 457 TAGFFFTPETNIAVTEFWRWWVVHMWVEGAFEFFIVAI 494


>UniRef50_Q7RST7 Cluster: Streptococcus pyogenes AMV258; n=5;
           Plasmodium (Vinckeia)|Rep: Streptococcus pyogenes AMV258
           - Plasmodium yoelii yoelii
          Length = 683

 Score = 31.9 bits (69), Expect = 5.2
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 65  LNVVFLILYRKRNEVF----YYCLTNFRISHIIY*YILTNDFYYEGITSRYRIKPEKYVT 232
           L+ +F + Y + N +      +C     I  II+ YI     YY+     Y I  +K V 
Sbjct: 195 LSEIFFLNYLENNNIINIEQIFCDEKNEILFIIFPYIKHQSMYYKKKPKIYSIYNKKLVR 254

Query: 233 LSNYWWIVNLYME 271
           L N  + ++LY E
Sbjct: 255 LENKKFKIHLYSE 267


>UniRef50_Q9X0X5 Cluster: Phosphoribosylglycinamide
           formyltransferase; n=4; Thermotogaceae|Rep:
           Phosphoribosylglycinamide formyltransferase - Thermotoga
           maritima
          Length = 205

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 SNYWWIVNLYMEGPSSFFI--VLVDRRVYGPLDGKKLPSPMDRQQMPEAES 382
           SN+  IVN    G  S  I  +LVDR  Y     KKL  P +R + P AES
Sbjct: 22  SNFEAIVNAARSGELSAEIQMLLVDRNCYAIERAKKLQIPWERLEKPWAES 72


>UniRef50_Q5L1Y7 Cluster: Nitric oxide reductase cytochrome b
           subunit; n=4; Bacillales|Rep: Nitric oxide reductase
           cytochrome b subunit - Geobacillus kaustophilus
          Length = 790

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 143 HIIY*YILTNDFYYEGITSRYRIKPEKYVTLSNYW--WIVNLYMEGPSSFFIVLV 301
           H+++   +   F+Y      + I+P+   T++++W  WI++L++EG    F V+V
Sbjct: 474 HLLFYSAIAVPFFY---IFAFFIEPDTNFTMADFWRWWIIHLWVEGIFEVFAVVV 525


>UniRef50_Q05FT5 Cluster: Putative replicative DNA helicase; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           replicative DNA helicase - Carsonella ruddii (strain PV)
          Length = 381

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 107 VFYYCLTNFRISHIIY*YILTNDFYYEGITSRYRIKPEKYVTLSN 241
           +  Y   NF+ S+ I+  I  NDF+YE  T +Y I+ + ++ L++
Sbjct: 14  IINYIFNNFKYSNNIFNIINENDFFYEK-TKKYFIEKKFFIKLNS 57


>UniRef50_A0D955 Cluster: Chromosome undetermined scaffold_41, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_41,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 744

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +2

Query: 65  LNVVFLILYRKRNEVFYYCLTNFRISHIIY*YILTNDFYYEGITSRYRIKPEKYVTLSNY 244
           +N VF  L    NE+F   +  +R +   +  ++ ND Y    T     K EK + + +Y
Sbjct: 373 MNTVFAELKFYENEIFEEGIMKYRQAFYNFKLLMLNDIYKYFSTDTSNQKSEKKIVMFDY 432

Query: 245 WWIVNLYMEGPSSFFI 292
              +N +      FF+
Sbjct: 433 KKFLNSFESQDQLFFL 448


>UniRef50_Q62CR6 Cluster: Nitric oxide reductase; n=21;
           Proteobacteria|Rep: Nitric oxide reductase -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 772

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 134 RISHIIY*YILTNDFYYE-GITSRYRIKPEKYVTLSNYWWIVNLYMEGPSSFFIVLV 301
           R+ H+I+         Y  G+   + + P   +T    WW+V+L++E P  FF   +
Sbjct: 454 RLEHLIWASTTNIALLYAFGMIPLFGVNPSFTITDFWRWWVVHLWVEQPFEFFAAAI 510


>UniRef50_Q23Q07 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 284

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 92  CTILRKQHLKPQ*PLNTRW 36
           CTI+RKQH KPQ  +  RW
Sbjct: 185 CTIIRKQHSKPQTLIKYRW 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,085,282
Number of Sequences: 1657284
Number of extensions: 8334515
Number of successful extensions: 17496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17491
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)