Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2209
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   1.1  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   2.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   3.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   6.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   8.0  

>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 197 SRYRI-KPEKYVTLSNYWWIVNLYMEGPSSFFIVLVDRRVYGPLDGKKLPSPMD 355
           SR R+  PE  VT + Y  + N+  EG SSF  V+ DR        K    P+D
Sbjct: 224 SRKRVVNPECSVTDTPYGKLNNVIGEGASSFIRVINDRNKLPIYVAKVFRPPLD 277


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 303 STRTIKKEDGPSMYRFTIHQ 244
           S   I K DGP + +FT+HQ
Sbjct: 560 SGEEITKVDGPGVLQFTVHQ 579


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 223 ICNFEQLLVDCKPIHGGAI-FLFYCPCRQ 306
           IC   +L +D K ++     FLFYC CR+
Sbjct: 268 ICLLSKLFLDHKMLYYDVDPFLFYCMCRR 296


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 316 VYSSVYKDNKKGRW 275
           VYS VYK +++GRW
Sbjct: 243 VYSFVYKLDRRGRW 256


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   FLLRWVDELTAHLVLSGYCGFKCCFLNIVQKTQ*SILLL 120
           FL +W+++ ++  +L       C FLN+      ++++L
Sbjct: 513 FLSQWIEDSSSEQLLEVIYKLYCSFLNLTDPCNDAVVIL 551


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 275 PSSFFI-VLVDRRVYGPLDGKKLPS 346
           PSS F+ +L    VYG  +GK LP+
Sbjct: 393 PSSLFMKILTLDHVYGSREGKDLPN 417


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -1

Query: 128  WLNNNKILHCVFC---TILRKQHLKPQ 57
            W N N+IL CV C    I+  ++  PQ
Sbjct: 927  WENENEILQCVCCRFNLIIGSEYYVPQ 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,114
Number of Sequences: 5004
Number of extensions: 36495
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)