Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2209
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0051 - 345125-345693,345833-346925                               29   1.4  
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707...    27   7.7  

>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 179 YYEGITSRYRIKPEKYVTLSNYWWIVNLY 265
           Y+E +++ Y IKP    T ++YW + NLY
Sbjct: 388 YFEQMSTMYNIKP----TFAHYWCMANLY 412


>03_02_0281 -
           7069847-7069876,7070152-7070218,7071320-7071445,
           7071727-7071916,7072008-7072110
          Length = 171

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 MEGPSSFFIVLVDRRVYGPLDGKKLP 343
           + GP +FF   +  +++GPLD + LP
Sbjct: 108 LSGPEAFFSEEMQDKLWGPLDMRLLP 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,281
Number of Sequences: 37544
Number of extensions: 222186
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)