Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2208
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 121 9e-29
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 2e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.013
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.013
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.28
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.37
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.65
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 6.1
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.0
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 8.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.0
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 121 bits (292), Expect = 9e-29
Identities = 60/149 (40%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Frame = +1
Query: 4 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 177
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 178 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSG 324
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 325 HISRNCPDGTKTCYVCGKPGHISRECDEA 411
H +R+C G K CY CGK GH S EC +A
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 99.5 bits (237), Expect = 4e-22
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Frame = +1
Query: 85 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 264
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 265 CPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 402
CP CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 CYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 180
CYKC R GH AR+C G S G +R C+ C GH ARDC +CY C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143
Query: 181 GHIARECAQSPDEPSCYNCNKTGHIARNC 267
GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 220 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 393
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 394 RECDEARN 417
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 30.7 bits (66), Expect = 0.21
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 1 VCYKCNRTGHFARECT 48
+CYKCN+ GH A CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +1
Query: 85 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 246
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 247 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 357
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 193 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 360
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 361 CYVCGKPGHISRECDE 408
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +1
Query: 4 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 171
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 172 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 294
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 28.7 bits (61), Expect = 0.86
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 355 KTCYVCGKPGHISRECDEARN 417
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 226 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 402
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 403 DEAR 414
E R
Sbjct: 141 SEPR 144
Score = 49.6 bits (113), Expect = 4e-07
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = +1
Query: 112 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 288
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 289 ATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 402
T+ C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 6/128 (4%)
Frame = +1
Query: 1 VCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC 162
VC+ C GH +++C T G + S +KC C GH A C E R
Sbjct: 88 VCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRG 147
Query: 163 YRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 342
R T H + + Y K + + E + CYNC H +C
Sbjct: 148 PRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGDDC 202
Query: 343 PDGTKTCY 366
+++ Y
Sbjct: 203 TLPSRSNY 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 226 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 345
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 280 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 432
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +1
Query: 88 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 222
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 325 HISRNCPDGTKTCYVCGKPGHISREC 402
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 124 HFARDCKEEADRCYRCNGTGHIAREC 201
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 4 CYKCNRTGHFAREC 45
CYKC + H REC
Sbjct: 1806 CYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 325 HISRNCPDGTKTCYVCGKPGHISREC 402
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 124 HFARDCKEEADRCYRCNGTGHIAREC 201
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 4 CYKCNRTGHFAREC 45
CYKC + H REC
Sbjct: 1806 CYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +1
Query: 262 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 372
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 205 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 375
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 277 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 381
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 205 QSPDEPSCYNCNKTGHIARN--CPEGGR 282
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 82 NRQREKCFKCNRTGHFARDCKEEA 153
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 100 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 225
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +1
Query: 193 RECAQSPDEPS-----CYNCNKTGHIARNCP 270
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 301 CYNCNKSGHISRNCPDGTKTCYVCGKP 381
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 8.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 1 VCYKCNRTGHFAREC 45
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +1
Query: 1 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-DCKEEADRCYRCNG 177
V K N GH E G V +S + K + +R G F+R + R + +
Sbjct: 391 VSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSK 450
Query: 178 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 300
H +PD P+ + ++ G+++ T+T
Sbjct: 451 AKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 586 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 488
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 625 KNKHERASTRPSIYKSTVEPHSS 557
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 92 VRSASSATAQDTLRGIARKRLTVA 163
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 274 GGRESATQTCYNCNKSG 324
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = -1
Query: 349 RRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRY 170
++DS +CCS + + + P S CCS T+ + ++
Sbjct: 228 KKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCTSEKPS 286
Query: 169 ICSNGQPLPC 140
CSNG+ C
Sbjct: 287 CCSNGKSTVC 296
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 343 PDGTKTCYVCGKPGHISRECDEARN 417
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 310 SYSRSASQTPAPPRDSSVRCGPSCCSCN 227
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,943
Number of Sequences: 5004
Number of extensions: 49941
Number of successful extensions: 245
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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