Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2204
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    30   2.4  
04_04_1434 - 33568258-33569415                                         29   4.1  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    28   9.5  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   9.5  

>07_03_0961 -
           22921761-22921850,22922204-22922338,22922409-22922531,
           22922621-22922707,22922780-22922831,22922939-22923063,
           22923724-22923932,22924206-22924407,22924526-22924630,
           22925353-22925414,22925755-22925944,22926017-22926112,
           22926203-22926305,22927019-22927122,22927264-22927395,
           22928257-22928343,22929121-22929206,22929291-22929383,
           22932197-22932284,22932402-22932514,22932621-22932743,
           22934153-22934204,22934365-22934408,22934498-22934571,
           22934655-22934746,22935594-22935661,22937146-22937221,
           22937323-22937679
          Length = 1055

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 631 VFTPDAVRRFSFRANEKESSWLILPVIICLSQRLSHACLSASPYLK 768
           + +PDA+ R    A + E+   +L  I+ +SQ   H CL + PY K
Sbjct: 207 LMSPDAILR-EVNAVDSENQKNLLTDILRMSQLQKHICLESHPYHK 251


>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 524 DMDFYIFNDIIY**TTRVVYYINTIIIPKHDHAVR 628
           +M FY FN I+Y    R +Y +NTI + +   A++
Sbjct: 132 EMPFYWFNFIVYDDADRRMYCVNTIFVVRLARAIQ 166


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 349 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGP 480
           +++++ C ++K  S+   +  H +F F+ YM   ++++RN   P
Sbjct: 585 IMMHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARP 628


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 56  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 154
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,857
Number of Sequences: 37544
Number of extensions: 272313
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)