Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2203
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   0.86 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.0  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 661 INILTYIFIMFANFAMSRIGNLNSHLLVV 575
           +N+  ++ I+ +N+A +RI  L S L +V
Sbjct: 102 VNVFFWVIILMSNYAFTRIILLKSVLEIV 130


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 352 CLDGGRAHSPPGC*VVTGA 408
           CL GG  H  PG   V GA
Sbjct: 131 CLSGGPKHPDPGSLQVPGA 149


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 475 YDDCPTLQTETHYCFTAEIGGVVV 546
           YDD  +++ + +Y     +GGV +
Sbjct: 489 YDDSESVEKKVNYVQEMNLGGVFI 512


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 650 YIYFHNVCEFCHESH 606
           ++ F+ +C+F HE +
Sbjct: 796 FMSFYEICDFLHEDN 810


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,140
Number of Sequences: 336
Number of extensions: 3923
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)