Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2203
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    30   2.0  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    30   2.0  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
           protein F08B12.3c protein.
          Length = 1086

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 250 ERPFQRNRARMKHKINNSLKGLAECAFIEGPTIN 149
           ERP +RN ARM++    ++K   +  FIE P+I+
Sbjct: 10  ERPIRRNYARMQYGEKKNIKHKLQQWFIENPSIS 43


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 504 NALLLHGRNRRSGGTYPCG 560
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 504 NALLLHGRNRRSGGTYPCG 560
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 238 QRNRARMKHKINNSLKGLAECAF--IEGPTINLNYLFIYLRITDRVYSK 98
           +RNRA  +H+    L  L  C F  IEGP I +   F Y     R +S+
Sbjct: 236 KRNRAMQEHRSRGKLMILITCVFLCIEGPYITM--CFFYESYNSREFSE 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,485
Number of Sequences: 27780
Number of extensions: 344280
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)