Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2202
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0XWU7 Cluster: Sensor protein; n=1; Alteromonadales ba...    35   2.2  
UniRef50_Q9V3P9 Cluster: CG3474-PA; n=6; Diptera|Rep: CG3474-PA ...    34   3.9  

>UniRef50_A0XWU7 Cluster: Sensor protein; n=1; Alteromonadales
           bacterium TW-7|Rep: Sensor protein - Alteromonadales
           bacterium TW-7
          Length = 954

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -2

Query: 559 LTLNFSNQRTTVITTLNTDRLYLATAVRATNTKAINLIKASLNKQLSE 416
           LT +++     V+T +  + LYL   +++   K +NL+K+  N +L++
Sbjct: 233 LTRSYTYSVNVVLTGIENELLYLTNKIKSAEEKKLNLVKSQFNSELTK 280


>UniRef50_Q9V3P9 Cluster: CG3474-PA; n=6; Diptera|Rep: CG3474-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 218

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -1

Query: 596 GFKGYEGGEGLKTYAELQQPEDHGHYYAEHGQALSSDSGEGYKYESY 456
           G  GYEGG         Q   D+GH + EHG       G G    SY
Sbjct: 145 GHSGYEGGHVEFEEHSSQSGHDYGHGHEEHGHGHGHGHGHGSSSHSY 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,025,426
Number of Sequences: 1657284
Number of extensions: 9737743
Number of successful extensions: 18655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18640
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)