Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2202
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   6.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.0  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 136 HDSTI*KINTHFKNVTS-DFTFHNILD*IRSHRTNIFTTRLPRHVTFELSLNQVQVF 303
           H S++ +I TH K   S DF+ HN +D        +  T       FE+ +NQ+Q+F
Sbjct: 384 HISSV-QILTHCKLPESQDFSMHNDVD-------ELLHTIPSNGAVFEMKINQIQIF 432


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 303 RNSSNKHLI*TA*RSMSLNPYDLNKL*FH*ARDRPKTYSDSCLFSDAF 446
           + S+NK ++ T  R  +L  Y    L  +   +  + YS+ C F+D F
Sbjct: 337 KGSTNKEILETILRKPNLQTYFFEFLKKNFCDENQRFYSEVCEFNDYF 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,952
Number of Sequences: 5004
Number of extensions: 45052
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)