Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2202
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0003 - 95371-95433,95485-95715,95809-95862,96730-96972,985...    28   6.3  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    28   6.3  

>09_01_0003 -
           95371-95433,95485-95715,95809-95862,96730-96972,
           98544-99317
          Length = 454

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 550 NFSNQRTTVITTLNTDRLYLATAVRATNTKAINLIKASLNKQLSEYVL 407
           ++ N    ++  + TD     TA+  T  +A++L  ++L K+LSE V+
Sbjct: 209 SYPNLTQALLLLVGTDLEKALTAIDETKAQALDLKVSNLKKELSEAVM 256


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 148 SLNHVCVFFFVWLKPIVFLIN*FCIRHTLSPSENVILINVGFFYYY 11
           SL H+   +F+    +V     FCI  TLS S   +L   G +Y++
Sbjct: 114 SLLHLDSPWFMLFSQLVNWFMFFCITRTLSNSMETVLTVTGLYYWF 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,789
Number of Sequences: 37544
Number of extensions: 240268
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)