Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2202
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        28   5.7  
Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 452 VNSFRICSPHRCR*IKPVRVQRSND 526
           V S   CSPH  R IKP   +R ND
Sbjct: 571 VESLMKCSPHYVRCIKPNETKRPND 595


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 452 VNSFRICSPHRCR*IKPVRVQRSND 526
           V S   CSPH  R IKP   +R ND
Sbjct: 508 VESLMKCSPHYVRCIKPNETKRPND 532


>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 282 T*FKSNVSGQSRRENVCSV*SNLVKYVVKCEIRCYVFKMS 163
           T F  N  G S   N C + +N   Y+ +CE+    F+ S
Sbjct: 203 TDFAENPVGYSDSFNACEMRANQETYITRCEMTYIYFRQS 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,364
Number of Sequences: 27780
Number of extensions: 246431
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)