Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2201
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XQ71 Cluster: Putative uncharacterized protein; n=2; ...    36   1.3  
UniRef50_A2EEZ4 Cluster: Beige/BEACH domain containing protein; ...    35   2.2  
UniRef50_Q23W34 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q14PI3 Cluster: Hypothetical transmembrane protein; n=1...    33   5.2  
UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   9.0  

>UniRef50_Q4XQ71 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 552

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 465 THTSLNIYIILYFLHLHTQLVNHLKIAQESIYTFLNLGQVKTTIHTMVFS 316
           T T    Y+ LYF  L   L+   K+ +   + +LNLG +K  IH+ + S
Sbjct: 22  TCTESTEYLHLYFKELKNHLITFKKVDELYNFCYLNLGDIKCPIHSRITS 71


>UniRef50_A2EEZ4 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2398

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 177  IFLYTDNTDFNLTD*HFACCLCLSSKWMCFDFSSIYFAFINNVSYYD*KPLCELWF*PDR 356
            I LY+D   F+        C+CL+ KW  F F   Y      + +Y   PL ++ F   +
Sbjct: 2329 IVLYSDRNGFDF-------CICLTQKWKVFTFELFYLMQQTKILFYGNFPLMKIEF--VK 2379

Query: 357  DLKTCIC 377
            D+   IC
Sbjct: 2380 DINCVIC 2386


>UniRef50_Q23W34 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1397

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 144  LNNRYWIYFLIFFLRVHIIFYF----LCFCFSCTYLNNNTS*VFFY 19
            + N +++YFL   L V +I+Y     LC C  CT +N  TS + FY
Sbjct: 1221 IKNYHFVYFLKKILIVILIYYLVEYPLCLCCICTIINIVTSLMTFY 1266


>UniRef50_Q14PI3 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 160

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 174 LHEIHISIIFLNNRYWIYFLIFFLRVHIIFYFLCFCF 64
           + ++ I II +NN     FL++F ++   +YF+CFCF
Sbjct: 125 IKKLKIVIILINNLKNHTFLVWFFKIDS-YYFICFCF 160


>UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=4; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Trypanosoma brucei brucei
          Length = 590

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 165 IHISIIFLN-NRYWIYFLIFFLRVHIIFYFLCFCF-SCTYLNNNTS*VFFYCL 13
           + ISIIF+     + YFL+FFL    +F F CFC   C +L  +      YCL
Sbjct: 412 LFISIIFIFFTMIYNYFLLFFL----MFVFKCFCLVDCLFLLFDYECCLVYCL 460


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,865,507
Number of Sequences: 1657284
Number of extensions: 8661903
Number of successful extensions: 21129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20974
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)