Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2201
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.65 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   4.6  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   4.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.0  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   8.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 153 IIFLNNRYWIYFLIFFLRVHIIFYFLCFCFSCTYL 49
           + FL+  + +YF  F +   + F+FLC C   ++L
Sbjct: 136 LFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -2

Query: 570 EVNFLYKYLKNFSFFYV*DVPNVFLSNCSY*GIKNTHTSLNIYIILYFLHLHTQLVNHLK 391
           EV      LK   +F   D         S+ G+K   T   + +  +F H+   L N+ K
Sbjct: 20  EVQHPCSILKYKVYFVTTDTFYCKYLTASFTGLKKFPTERQLPLECHFNHIDWDLGNNFK 79

Query: 390 IAQESIYTF 364
           + +   YTF
Sbjct: 80  VKEGVFYTF 88


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 438 ILYFLHLHTQLVNHLKIAQESIYTFLNLGQVK 343
           +L  +HLHT+L++   I   + + FL+L + K
Sbjct: 113 VLESVHLHTKLIDGRPITNFASFNFLDLAENK 144


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 581 FYFYYIFYNSGVNFNIFFRYLIHLRI*ISP 670
           F+F    ++    F ++F YL+H+RI  SP
Sbjct: 28  FFFELRLFSPQCLFIVYFFYLLHVRINTSP 57


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 125 FIS*SFFYEYTLYFIFCVFVL 63
           FIS + F    +YF+FCVF +
Sbjct: 673 FISTALFSIIMIYFVFCVFYI 693


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 548 YLYRKLTSKRVFYFYYIFYNSGVNFN 625
           +LYRKL+ K + Y  YI +    N+N
Sbjct: 306 FLYRKLSLKNLDYSKYITFVQDRNYN 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,593
Number of Sequences: 5004
Number of extensions: 41443
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)