Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2201
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical...    29   3.2  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL132876-24|CAE17987.1|  405|Caenorhabditis elegans Hypothetical
           protein Y105E8A.29 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 141 NNRYWIYFLIFFL--RVHIIFYFLCFCFS 61
           NN  +I F+  F+  R HI+ +F  FCFS
Sbjct: 374 NNSKYIIFIYLFISEREHILLFFHFFCFS 402


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 204 NQCCQYKEK*LHEIHISIIFLNNRYWIYFLIFFLRVHIIF-YFLCFCF 64
           N+C +  +     +H  +   N RY+ +FL   L +H+++ +FLCF +
Sbjct: 123 NRCIETFDHHCPWVHNCVGKRNYRYFFFFLCS-LSIHMMYVFFLCFAY 169


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  LCFCFSCTYLNNNTS*VFFYCL 13
           LCFCF C +L N+   +   C+
Sbjct: 60  LCFCFGCVHLMNSNMGMAIVCM 81


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  LCFCFSCTYLNNNTS*VFFYCL 13
           LCFCF C +L N+   +   C+
Sbjct: 46  LCFCFGCVHLMNSNMGMAIVCM 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,020
Number of Sequences: 27780
Number of extensions: 231020
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)