Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2200
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    36   0.022
12_01_0508 + 4027113-4028522                                           30   2.0  
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492...    29   3.4  
01_03_0227 + 13967966-13968559                                         28   6.0  

>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
 Frame = +2

Query: 23  KKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKISDLISD 202
           +K + + I LD AKAFD+++  +L   L   G   N +S  ++ L   +  V +  +   
Sbjct: 32  RKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGK 91

Query: 203 EPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSI------------YTYADDTALVFH 346
                 G+ QG  L P +F++  + L +L   N  I              YADDT ++  
Sbjct: 92  WITCKKGLRQGDPLSPYLFILVADVLQRLLERNLQIRHPIYHDRPCATIQYADDTLVICR 151

Query: 347 GSSWEA-AFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLS 472
               +  A   A    +  TD L+     L++  + +VT  L+
Sbjct: 152 AVEDDVLALKSALLQFSKATDVLATVQQILSIGISNFVTSRLT 194


>12_01_0508 + 4027113-4028522
          Length = 469

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = +2

Query: 176 VKISDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSIYTYADDTALVFHGSS 355
           VKI  +   E P  Y V     L P++       L +L     +    A D  ++ H ++
Sbjct: 134 VKIQGMYDHEYPEEYFVYTADALRPSLADALCPTLTRLPRFPDNRQRLAGDIGILNHAAA 193

Query: 356 WEAAFSFAQCGLNTVTDWLS 415
               FSFA   L T  +W S
Sbjct: 194 AGDGFSFAVASLQTFMEWQS 213


>04_01_0374 +
           4914864-4914947,4915094-4915217,4921146-4921471,
           4921527-4921658,4921824-4922362,4922445-4922597,
           4922695-4922995
          Length = 552

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 220 ICYRGFVTDKVTDFDTLTSARKVAPEKRKLIASQPNGFKLS 98
           + ++  VTDKV   D L    K+ P K KL    P G  LS
Sbjct: 201 MAFKPSVTDKVHGTDLLAVYAKLTPPKSKLSIEAPRGPALS 241


>01_03_0227 + 13967966-13968559
          Length = 197

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 447 LSTSLFPCLRVVKYHLRLFHL*PTPVTLLEQTACG--CPS 560
           +S S  P  R+    L  FHL PTPV  L  ++C   CPS
Sbjct: 130 MSASHLPEERIPASLLPTFHLLPTPVLPLSTSSCRRMCPS 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,033
Number of Sequences: 37544
Number of extensions: 398358
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)