Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2200
(680 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 85 8e-17
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 84 2e-16
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 83 3e-16
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 81 2e-15
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 75 9e-14
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 75 9e-14
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 73 5e-13
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 73 5e-13
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 72 8e-13
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 69 8e-12
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 68 1e-11
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 68 1e-11
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 68 1e-11
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 68 1e-11
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 68 1e-11
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 68 1e-11
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 68 1e-11
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 68 1e-11
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 68 1e-11
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 67 2e-11
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 67 2e-11
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 61 1e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 61 2e-09
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 51 1e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 45 1e-04
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 44 2e-04
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep... 30 2.5
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p... 30 2.5
AY122168-1|AAM52680.1| 318|Drosophila melanogaster LD26105p pro... 30 3.4
AE014296-977|AAF50763.2| 312|Drosophila melanogaster CG10591-PA... 30 3.4
AY061122-1|AAL28670.1| 409|Drosophila melanogaster LD10434p pro... 29 4.5
AE014298-2625|AAF48775.1| 409|Drosophila melanogaster CG6769-PA... 29 4.5
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 85.0 bits (201), Expect = 8e-17
Identities = 54/157 (34%), Positives = 88/157 (56%)
Frame = +2
Query: 2 EIVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVK 181
EI T + + +FLD+++AFD + + L+ K++ + L + L +SYL R+ V+
Sbjct: 565 EIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIK-ISLPESTHKLLKSYLYDRKFAVR 623
Query: 182 ISDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSIYTYADDTALVFHGSSWE 361
+ S I GVPQGS+LGPT++LIY D+ N + ++ T+ADDTA++ S
Sbjct: 624 CNTATSTVHTIEAGVPQGSVLGPTLYLIYTADI-PTN-SRLTVSTFADDTAILSRSRSPI 681
Query: 362 AAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLS 472
A + L + WLS + +N K K+VTF+L+
Sbjct: 682 QATAQLALYLIDIKKWLSDWRIKVNEQKCKHVTFTLN 718
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 83.8 bits (198), Expect = 2e-16
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Frame = +2
Query: 2 EIVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVK 181
+I+T D K +FLD+ +AFD + + L K++ L L +SYL GRR V+
Sbjct: 567 QILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQT-LPAPYFGLLKSYLEGRRFAVR 625
Query: 182 ISDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNIT---NGSIYTYADDTALVFHGS 352
IS E +A GVPQGS+LGP ++ +Y +D+ Q +++ + T+ADD + +
Sbjct: 626 FHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSR 685
Query: 353 SWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLSTR 478
A Q ++W + + +N K+ V F+L R
Sbjct: 686 CEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRR 727
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 83.0 bits (196), Expect = 3e-16
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Frame = +2
Query: 2 EIVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVK 181
EI T + + IFLD+A+AFD + + L+ K+ + L N L +SYL R ++
Sbjct: 563 EIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL-LPQNTHKLLKSYLYNRVFAIR 621
Query: 182 ISDLISDEPPIAYGVPQGSILGPTIFLIYINDL-CQLNITNGSIYTYADDTALVFHGSSW 358
S + I GVPQGS+LGP ++ +Y D N+T T+ADDTA++
Sbjct: 622 CDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTS---TFADDTAILSRSKCP 678
Query: 359 EAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLS 472
A + L +V WL+ +++NV K K VTF+L+
Sbjct: 679 IKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLN 716
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 80.6 bits (190), Expect = 2e-15
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Frame = +2
Query: 2 EIVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVK 181
EI T + + IFLD+A+AFD + + L+ K+ + L N L +SYL ++
Sbjct: 563 EIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL-LPQNTHKLLKSYLYNTVFAIR 621
Query: 182 ISDLISDEPPIAYGVPQGSILGPTIFLIYINDL-CQLNITNGSIYTYADDTALVFHGSSW 358
S + I GVPQGS+LGP ++ +Y D N+T T+ADDTA++
Sbjct: 622 CDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTS---TFADDTAILSRSKCP 678
Query: 359 EAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLS 472
A + L +V WL+ +++NV K K VTF+L+
Sbjct: 679 IKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLN 716
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 74.9 bits (176), Expect = 9e-14
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Frame = +2
Query: 17 LDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLF-RSYLTGRR*CVKISDL 193
++ K +G FLD+ +AFD + L+ K A L QL L +S+L R V +
Sbjct: 574 MENKEYAVGAFLDIQQAFDRVWHPGLLYK--AKRLFPPQLYLVVKSFLEERTFHVSVDGY 631
Query: 194 ISDEPPIAYGVPQGSILGPTIFLIYINDL------CQLNITNGSIYTYADDTALVFHGSS 355
S PIA GVPQGS+LGPT++ ++ +D+ +++ + I TYADDTA++ S
Sbjct: 632 KSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKS 691
Query: 356 WEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLST 475
AA S Q L+ W + +N +K VTF+ T
Sbjct: 692 ILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRT 731
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 74.9 bits (176), Expect = 9e-14
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Frame = +2
Query: 17 LDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLF-RSYLTGRR*CVKISDL 193
++ K +G FLD+ +AFD + L+ K A L QL L +S+L R V +
Sbjct: 376 MENKEYAVGAFLDIQQAFDRVWHPGLLYK--AKRLFPPQLYLVVKSFLEERTFHVSVDGY 433
Query: 194 ISDEPPIAYGVPQGSILGPTIFLIYINDL------CQLNITNGSIYTYADDTALVFHGSS 355
S PIA GVPQGS+LGPT++ ++ +D+ +++ + I TYADDTA++ S
Sbjct: 434 KSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKS 493
Query: 356 WEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLST 475
AA S Q L+ W + +N +K VTF+ T
Sbjct: 494 ILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRT 533
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 72.5 bits (170), Expect = 5e-13
Identities = 48/154 (31%), Positives = 79/154 (51%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I + K V + LD+ AFDT+ L+ KL+ +G + + +++LT R V +
Sbjct: 593 IKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNL 652
Query: 185 SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSIYTYADDTALVFHGSSWEA 364
+ S + GVPQGS+LGPT+F I+ +D+ Q TN + +ADD A+ G S+
Sbjct: 653 NSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQ--ATNCVLSLFADDAAVYSAGFSYSE 710
Query: 365 AFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFS 466
Q LN + + K + +N +KT + F+
Sbjct: 711 INQSMQSYLNELDIYYKKWKIKINPNKTNAIFFT 744
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 72.5 bits (170), Expect = 5e-13
Identities = 48/154 (31%), Positives = 79/154 (51%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I + K V + LD+ AFDT+ L+ KL+ +G + + +++LT R V +
Sbjct: 541 IKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNL 600
Query: 185 SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSIYTYADDTALVFHGSSWEA 364
+ S + GVPQGS+LGPT+F I+ +D+ Q TN + +ADD A+ G S+
Sbjct: 601 NSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQ--ATNCVLSLFADDAAVYSAGFSYSE 658
Query: 365 AFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFS 466
Q LN + + K + +N +KT + F+
Sbjct: 659 INQSMQSYLNELDIYYKKWKIKINPNKTNAIFFT 692
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 71.7 bits (168), Expect = 8e-13
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ D K +F+D+ +AFD + LI+K++ + + +SYL RR V++
Sbjct: 569 ILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRV 627
Query: 185 SDLISDEPPIAYGVPQGSILGPTIFLIYINDL-C-----QLNITNGSIYTYADDTALVFH 346
+ S + GVPQGS+LGP ++ ++ DL C + + TYADD AL++
Sbjct: 628 RNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYS 687
Query: 347 GSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSLSTRGKISS 493
+ A Q L T+ W + +L +N KT F+L T +++
Sbjct: 688 SNCCNEAARGLQEYLTTLAAWCKRWILKVNPQKTINPCFTLKTLSPVTA 736
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 68.5 bits (160), Expect = 8e-12
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 625 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 683
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ I S + TYADDT ++
Sbjct: 684 QAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTQRIMLSTYADDTIVLS 743
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
+ AA + L T +DW K +++N KT +V F+L
Sbjct: 744 SDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIFTL 785
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 68.1 bits (159), Expect = 1e-11
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ D+K+ FLD+ +AFD + L+ KL + R L +YL+ R V+I
Sbjct: 169 ILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPR-YLFDLLENYLSNRTFSVRI 227
Query: 185 S-DLISDEPPIAYGVPQGSILGPTIFLIYINDL-------CQLNI-------TNGSIYTY 319
+ S I GVPQGSILGP ++ IY +D+ NI TN + TY
Sbjct: 228 DGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATY 287
Query: 320 ADDTALVFHGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
ADDT ++ + A + Q LN W K + +N KT ++ FSL
Sbjct: 288 ADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL 337
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 68.1 bits (159), Expect = 1e-11
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ D+K+ FLD+ +AFD + L+ KL + R L +YL+ R V+I
Sbjct: 616 ILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPR-YLFDLLENYLSNRTFSVRI 674
Query: 185 S-DLISDEPPIAYGVPQGSILGPTIFLIYINDL-------CQLNI-------TNGSIYTY 319
+ S I GVPQGSILGP ++ IY +D+ NI TN + TY
Sbjct: 675 DGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATY 734
Query: 320 ADDTALVFHGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
ADDT ++ + A + Q LN W K + +N KT ++ FSL
Sbjct: 735 ADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL 784
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 68.1 bits (159), Expect = 1e-11
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ D+K+ FLD+ +AFD + L+ KL + R L +YL+ R V+I
Sbjct: 616 ILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPR-YLFDLLENYLSNRTFSVRI 674
Query: 185 S-DLISDEPPIAYGVPQGSILGPTIFLIYINDL-------CQLNI-------TNGSIYTY 319
+ S I GVPQGSILGP ++ IY +D+ NI TN + TY
Sbjct: 675 DGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATY 734
Query: 320 ADDTALVFHGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
ADDT ++ + A + Q LN W K + +N KT ++ FSL
Sbjct: 735 ADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL 784
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 68.1 bits (159), Expect = 1e-11
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ D+K+ FLD+ +AFD + L+ KL + R L +YL+ R V+I
Sbjct: 616 ILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPR-YLFDLLENYLSNRTFSVRI 674
Query: 185 S-DLISDEPPIAYGVPQGSILGPTIFLIYINDL-------CQLNI-------TNGSIYTY 319
+ S I GVPQGSILGP ++ IY +D+ NI TN + TY
Sbjct: 675 DGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATY 734
Query: 320 ADDTALVFHGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
ADDT ++ + A + Q LN W K + +N KT ++ FSL
Sbjct: 735 ADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL 784
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 497 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 555
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ +I + S + TYADDT ++
Sbjct: 556 QAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLS 615
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
AA + L T +DW K +++N KT +V ++L
Sbjct: 616 SDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTL 657
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 613 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 671
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ +I + S + TYADDT ++
Sbjct: 672 QAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLS 731
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
AA + L T +DW K +++N KT +V ++L
Sbjct: 732 SDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTL 773
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 613 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 671
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ +I + S + TYADDT ++
Sbjct: 672 QAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLS 731
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
AA + L T +DW K +++N KT +V ++L
Sbjct: 732 SDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTL 773
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 575 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 633
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ +I + S + TYADDT ++
Sbjct: 634 QAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLS 693
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
AA + L T +DW K +++N KT +V ++L
Sbjct: 694 SDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTL 735
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 67.7 bits (158), Expect = 1e-11
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 613 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 671
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ +I + S + TYADDT ++
Sbjct: 672 QAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLS 731
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
AA + L T +DW K +++N KT +V ++L
Sbjct: 732 SDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHVIYTL 773
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 67.3 bits (157), Expect = 2e-11
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = +2
Query: 2 EIVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVK 181
EI T + + +FLD+A+AFD + + L+ K+ + L N L +SYL R V+
Sbjct: 104 EIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKIIQL-LPQNIHKLLKSYLDKRVFAVR 162
Query: 182 ISDLISDEPPIAYGVPQGSILGPTIFLIYINDL-CQLNITNGSIYTYADDTALV 340
S S + I GVPQGS+LGP ++ +Y D+ +T I+T+ADDTA++
Sbjct: 163 CSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQLT---IFTFADDTAII 213
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 66.9 bits (156), Expect = 2e-11
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 7/162 (4%)
Frame = +2
Query: 5 IVTKLDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKI 184
I+ ++K +FLD+++AFD + L+ KL + L N + SYLT R VK
Sbjct: 613 ILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKD 671
Query: 185 -SDLISDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGS------IYTYADDTALVF 343
+ S I GVPQGS LGP ++ I+ +D+ I S + TYADDT ++
Sbjct: 672 QAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLS 731
Query: 344 HGSSWEAAFSFAQCGLNTVTDWLSKNLLTLNVDKTKYVTFSL 469
+ AA + L + +DW K +++N KT +V F+L
Sbjct: 732 SDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHVIFTL 773
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 61.3 bits (142), Expect = 1e-09
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 17 LDKKNKVIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKISDLI 196
L KN V + D +AFD + I ++ +LE G+ +L ++++T R V+I+++
Sbjct: 572 LSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVT 631
Query: 197 SDEPPIAYGVPQGSILGPTIFLIYINDLCQLNITNGSIY--TYADDTALVF 343
S+ + G+PQGS L +F+I I D+ + + IY YADD A++F
Sbjct: 632 SNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADD-AIIF 681
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 60.9 bits (141), Expect = 2e-09
Identities = 37/107 (34%), Positives = 60/107 (56%)
Frame = +2
Query: 35 VIGIFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKISDLISDEPPI 214
V+G F+D AFD + +++L +G R ++ L++S+ +GRR ++ S + E P+
Sbjct: 572 VLGTFVDFKGAFDNVEWSAALSRLADLGCR--EMGLWQSFFSGRRAVIRSSSG-TVEVPV 628
Query: 215 AYGVPQGSILGPTIFLIYINDLCQLNITNGSIYTYADDTALVFHGSS 355
G PQGSI GP I+ I ++ L Q + YADD L+ G+S
Sbjct: 629 TRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNS 675
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 51.2 bits (117), Expect = 1e-06
Identities = 32/141 (22%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Frame = +2
Query: 44 IFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKISDLISDEPPIAYG 223
+ LD ++AFD + + ++I +L+ + +++++ R+ V++ S P+ G
Sbjct: 573 VTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNG 632
Query: 224 VPQGSILGPTIFLIYINDLCQLNITNGSI--YTYADDTALVFH-GSSWEAAFSFAQCGLN 394
+PQGS + +FLI N L + + I YADD L+ + + F+ +
Sbjct: 633 IPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNL-FD 691
Query: 395 TVTDWLSKNLLTLNVDKTKYV 457
+ +W S + +L++ K +++
Sbjct: 692 DIENWCSYSGASLSLSKCQHL 712
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 44.8 bits (101), Expect = 1e-04
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Frame = +2
Query: 44 IFLDLAKAFDTISILTLITKLEAVGLRGNQLSLFRSYLTGRR*CVKISDLISDEPPIAYG 223
I LD+ AF+T ++ + +G+ + +Y R D ++ G
Sbjct: 554 ITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQ-VSAG 612
Query: 224 VPQGSILGPTIFLIYINDLCQLNITNG-SIYTYADDTALVFHGSSWEAAFSFAQCGLNTV 400
VPQGS+LGP ++ I + + ++ G ++ +ADD A+ + + +
Sbjct: 613 VPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAA 672
Query: 401 TDWLSKNLLTLNVDKTKYVTFS 466
+WL K L + KT+ V S
Sbjct: 673 IEWLEKVGLKIAAHKTEVVLLS 694
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 44.0 bits (99), Expect = 2e-04
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 221 GVPQGSILGPTIFLIYINDLCQLNITNGS-IYTYADDTALVFHGSSWEAAFSFAQCGLNT 397
GVPQGS+LGP ++ + + +L + S I +ADD AL+ A +
Sbjct: 50 GVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRA 109
Query: 398 VTDWLSKNLLTLNVDKTKYVTFS 466
+ WLS L L +KTK V S
Sbjct: 110 IEHWLSSMGLELAPEKTKAVLIS 132
>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
depedent uracil/thymineDNA glycosylase protein.
Length = 1738
Score = 30.3 bits (65), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 401 LRCSGHIEQN*KLPPKNCHEIREQYRQHR 315
L C GH+EQ+ + +N H + +Q QH+
Sbjct: 469 LDCHGHLEQSTPISQQNQHHLSQQIHQHQ 497
>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
protein.
Length = 1738
Score = 30.3 bits (65), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 401 LRCSGHIEQN*KLPPKNCHEIREQYRQHR 315
L C GH+EQ+ + +N H + +Q QH+
Sbjct: 469 LDCHGHLEQSTPISQQNQHHLSQQIHQHQ 497
>AY122168-1|AAM52680.1| 318|Drosophila melanogaster LD26105p
protein.
Length = 318
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 659 GPPTKRLPCTLTPDVRS-PPRSEP*IPNAICPGKGG 555
GPP PC P +RS PP P P PG GG
Sbjct: 90 GPPGYCFPCPAPPPLRSFPPPGVPVPPFISTPGGGG 125
>AE014296-977|AAF50763.2| 312|Drosophila melanogaster CG10591-PA
protein.
Length = 312
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 659 GPPTKRLPCTLTPDVRS-PPRSEP*IPNAICPGKGG 555
GPP PC P +RS PP P P PG GG
Sbjct: 84 GPPGYCFPCPAPPPLRSFPPPGVPVPPFISTPGGGG 119
>AY061122-1|AAL28670.1| 409|Drosophila melanogaster LD10434p
protein.
Length = 409
Score = 29.5 bits (63), Expect = 4.5
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -3
Query: 576 NLSWQGRGNRRQFVPRALQEWAISEKGEDDILPRVDREKVTYLVLSTFSVSRFLDSQSVT 397
NLS RRQF + + ++ + ++L R +RE++T S S + + ++SV
Sbjct: 66 NLSVYCHACRRQFASQKAHDNHLNSRKHKELLARFEREQMTASGGSA-STATSVCTRSVV 124
Query: 396 VFRPH*AKLKAAS 358
RPH A AA+
Sbjct: 125 EQRPHPALAAAAA 137
>AE014298-2625|AAF48775.1| 409|Drosophila melanogaster CG6769-PA
protein.
Length = 409
Score = 29.5 bits (63), Expect = 4.5
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -3
Query: 576 NLSWQGRGNRRQFVPRALQEWAISEKGEDDILPRVDREKVTYLVLSTFSVSRFLDSQSVT 397
NLS RRQF + + ++ + ++L R +RE++T S S + + ++SV
Sbjct: 66 NLSVYCHACRRQFASQKAHDNHLNSRKHKELLARFEREQMTASGGSA-STATSVCTRSVV 124
Query: 396 VFRPH*AKLKAAS 358
RPH A AA+
Sbjct: 125 EQRPHPALAAAAA 137
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,774,112
Number of Sequences: 53049
Number of extensions: 656767
Number of successful extensions: 2069
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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