Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2199
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 212 4e-56
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 102 4e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 9e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 9e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 80 3e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 60 3e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 3e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 52 8e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 212 bits (518), Expect = 4e-56
Identities = 101/137 (73%), Positives = 107/137 (78%)
Frame = -1
Query: 697 SYELSRRSGHHYRKRKIPLPRGSLPTLVLGYEACGIHETTYNSIMKCDVDIRKDLYANTV 518
SYEL + P LG E GIHE TYNSIMKCDVDIRKDLY N V
Sbjct: 239 SYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVV 298
Query: 517 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 338
+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 299 MSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWIS 358
Query: 337 KQEYDESGPSIVHRKCF 287
KQEYDESGP IV+RKCF
Sbjct: 359 KQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 102 bits (245), Expect = 4e-23
Identities = 46/110 (41%), Positives = 76/110 (69%)
Frame = -1
Query: 616 VLGYEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTM 437
++G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKN 330
Query: 436 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 287
++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 331 QVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 684 PDGQVITIGNERFRCPEALFQPSFLG 607
PD Q IT+G E F PE LF P +G
Sbjct: 248 PDNQTITLGTECFSAPEVLFNPEMMG 273
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.1 bits (226), Expect = 9e-21
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -1
Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 422
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 421 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 314
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -2
Query: 687 FPDGQVITIGNERFRCPEALFQPSFLGMKLAASTRP 580
FPDG G ERFR E LF PSF + A +T P
Sbjct: 283 FPDGVTHKFGQERFRISEILFNPSFSASRSAETTPP 318
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 9e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 416
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 415 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 290
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 687 FPDGQVITIGNERFRCPEALFQP 619
FPDG + G ER++ PE LF P
Sbjct: 266 FPDGSRMMFGAERYQIPEHLFVP 288
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 79.8 bits (188), Expect = 3e-16
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 12/113 (10%)
Frame = -1
Query: 616 VLGYEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL----- 452
++G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 266 LVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERV 325
Query: 451 ---APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 314
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 326 LHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -2
Query: 684 PDGQVITIGNERFRCPEALFQPSFLG 607
PDG+VI +G+ER+ CPE LFQP +G
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVG 268
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -1
Query: 586 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST----------- 440
E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 439 ---MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 296
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/122 (22%), Positives = 58/122 (47%)
Frame = -1
Query: 667 HYRKRKIPLPRGSLPTLVLGYEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 488
H +I +P ++G + GI E + + + ++ ++ L +N +++GG PG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
Query: 487 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 308
+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 650 METRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPE 709
Query: 307 IV 302
+
Sbjct: 710 YI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.0 bits (119), Expect = 8e-08
Identities = 30/101 (29%), Positives = 48/101 (47%)
Frame = -1
Query: 595 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 416
GI E S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEP 358
Query: 415 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 293
+ W S + L + I++ EY E G +I+ RK
Sbjct: 359 SDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 675 QVITIGNERFRCPEALFQPSFLGMKLA 595
QV+ + NERF PE LF PS + ++ A
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREA 298
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 541 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 371
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 370 SLSTFQQMWISKQEYDESGPSIVHRK 293
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 394 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 293
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 402 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 307
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 469 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 359
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 512 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 333
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 332 GV 327
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,212
Number of Sequences: 5004
Number of extensions: 55727
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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