Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IJL2 Cluster: Putative uncharacterized protein; n=1; ...    35   0.44 
UniRef50_Q8AB44 Cluster: Sensor protein; n=1; Bacteroides thetai...    32   2.4  
UniRef50_Q94168 Cluster: Serpentine receptor, class g (Gamma) pr...    32   2.4  
UniRef50_A7IXY5 Cluster: Putative uncharacterized protein b810L;...    31   4.1  
UniRef50_Q54S68 Cluster: Putative uncharacterized protein; n=3; ...    31   5.4  
UniRef50_A3ETH4 Cluster: Putative uncharacterized protein; n=1; ...    31   7.2  
UniRef50_UPI00006CC47D Cluster: hypothetical protein TTHERM_0013...    30   9.5  
UniRef50_Q26DU8 Cluster: Putative uncharacterized protein; n=1; ...    30   9.5  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    30   9.5  
UniRef50_Q9U6W7 Cluster: CLC chloride channel protein; n=4; Caen...    30   9.5  
UniRef50_Q86B33 Cluster: Serpentine receptor, class g (Gamma) pr...    30   9.5  
UniRef50_Q54I24 Cluster: ADP-ribosylation factor-related; n=1; D...    30   9.5  
UniRef50_A0CZ51 Cluster: Chromosome undetermined scaffold_314, w...    30   9.5  

>UniRef50_Q8IJL2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 2405

 Score = 34.7 bits (76), Expect = 0.44
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 245 REPKTGICDVSYDYVTLIT-NRWPKKKTFNVSKQYPYKNSSIRTLNTKSL 99
           RE  T +CD SYD    +T + +P+ K  NV K Y Y+ + + + N   L
Sbjct: 500 REACTVLCDWSYDGTLFMTASTYPRMKVENVFKIYTYEGTLVNSYNFNEL 549


>UniRef50_Q8AB44 Cluster: Sensor protein; n=1; Bacteroides
           thetaiotaomicron|Rep: Sensor protein - Bacteroides
           thetaiotaomicron
          Length = 1370

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 183 VAKEKNIQCLQAVPI*EQLHQDSEY*IFSKDIDSDRAGTELYGLL 49
           +A  KN+ C+ +VP+  ++   SEY      +  D+ G EL G L
Sbjct: 419 IANLKNVSCITSVPLLNEIWLGSEYYPEIYKVKKDKKGVELLGTL 463


>UniRef50_Q94168 Cluster: Serpentine receptor, class g (Gamma)
           protein 26; n=3; Caenorhabditis|Rep: Serpentine
           receptor, class g (Gamma) protein 26 - Caenorhabditis
           elegans
          Length = 337

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 105 FSIQSPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRL 242
           F++   DG + ++ L+GD   F     +R  C+  + ++ +PSF L
Sbjct: 66  FTLYLADGVITLYFLVGDTIVFRFTSYVRPVCEFFIPFLKEPSFVL 111


>UniRef50_A7IXY5 Cluster: Putative uncharacterized protein b810L;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           b810L - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 227

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = -2

Query: 245 REPKTGICDVSYDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQ 66
           +EP T I  + +    LIT     K TF  SK Y  KN   + +N+K L  I +   PVQ
Sbjct: 77  KEPSTVILVILF---VLITTFVLYKNTFEKSKMYKAKNVVGKIMNSKKLKNIAVQL-PVQ 132

Query: 65  SSMG 54
             +G
Sbjct: 133 LPVG 136


>UniRef50_Q54S68 Cluster: Putative uncharacterized protein; n=3;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1314

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 260 DDDSRREPKTGICDVSYDYVTLITNRWPKKKTFNV 156
           DD ++ + KT  C + YDY+ LI++   KKK  ++
Sbjct: 317 DDKNKNKTKTRECYILYDYLILISSLQTKKKLLDL 351


>UniRef50_A3ETH4 Cluster: Putative uncharacterized protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Putative
           uncharacterized protein - Leptospirillum sp. Group II
           UBA
          Length = 291

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 171 FLWPPIRNQCDVIVAYVTDPSFRL 242
           FLWP + + CDV+ +   DPSF +
Sbjct: 113 FLWPWLYHSCDVMGSVANDPSFSM 136


>UniRef50_UPI00006CC47D Cluster: hypothetical protein
           TTHERM_00137810; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00137810 - Tetrahymena
           thermophila SB210
          Length = 1371

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 197 LITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSSM 57
           + +NR   K T NV+K    K   + T+N KS+  I     P+QS +
Sbjct: 440 IYSNRQSSKNTQNVNKIQEQKQFQLPTINIKSINTINSQVLPIQSQV 486


>UniRef50_Q26DU8 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BBFL7|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BBFL7
          Length = 232

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 233 TGICDVSYDYVTLITNRWPKKKTFNV-SKQYPYKNSSIRTLNTKSLAKILIPTEPVQSS 60
           +GI D + D   L+     ++ +F++ S+ YP +N SI  +N  S  +  +PT+ ++ S
Sbjct: 76  SGITDSNGDVSFLMLVNTDEQTSFSLTSEDYPRRNVSISDVNYASTLEYTLPTQTLKQS 134


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 349 DSL*GELGTGPPLE 308
           DSL GELGTGPPLE
Sbjct: 279 DSLYGELGTGPPLE 292


>UniRef50_Q9U6W7 Cluster: CLC chloride channel protein; n=4;
           Caenorhabditis|Rep: CLC chloride channel protein -
           Caenorhabditis elegans
          Length = 844

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 495 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 543


>UniRef50_Q86B33 Cluster: Serpentine receptor, class g (Gamma)
           protein 27; n=3; Caenorhabditis|Rep: Serpentine
           receptor, class g (Gamma) protein 27 - Caenorhabditis
           elegans
          Length = 338

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 24  MMMKFLIDLITHRALYRLGRNQYLC*RFSIQSPDGAVLIWVLLGDIECFFLWPPIRNQCD 203
           + + F+I ++  R  + +  + +    F++   DGAV +  LL DI        +R  C+
Sbjct: 43  LYLSFMIAIVKRRGHHEVFEDSF----FALHLVDGAVTLIFLLLDISLIRQTTYVRPTCE 98

Query: 204 VIVAYVTDPSFRL 242
             ++   DPS+ L
Sbjct: 99  YFLSNFKDPSYYL 111


>UniRef50_Q54I24 Cluster: ADP-ribosylation factor-related; n=1;
           Dictyostelium discoideum AX4|Rep: ADP-ribosylation
           factor-related - Dictyostelium discoideum AX4
          Length = 216

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 108 SIQSPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRL 242
           +IQ     + +W L G+     LW P  N+C  I+ +V D S RL
Sbjct: 55  TIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAII-FVVDSSDRL 98


>UniRef50_A0CZ51 Cluster: Chromosome undetermined scaffold_314,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_314,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 727

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -2

Query: 221 DVSYDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTK-SLAKILIPTEPVQSSMGY*I 45
           ++SY+ +  I++   K+K+ N+ KQY  ++SSI+    K S ++    ++ +Q+ M Y  
Sbjct: 544 EISYEEIKQISSEPLKEKSTNLEKQYT-RSSSIKQRQLKSSQSRNRAKSQSIQNQMKY-- 600

Query: 44  NKKFHHHFM 18
            ++F ++F+
Sbjct: 601 -QQFSYNFI 608


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,594,303
Number of Sequences: 1657284
Number of extensions: 5952075
Number of successful extensions: 13667
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13661
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)