Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   1.1  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   2.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   2.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   6.0  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    24   6.0  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.0  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    24   7.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    24   7.9  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 221 HRSQFSA--PFSNHRPHS*AIKKKKKNGPRPLEGGP 322
           HRS F A  PF +      ++K+K KN   P   GP
Sbjct: 5   HRSTFKAKKPFKSKHASKSSLKEKYKNEVEPHRSGP 40


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 310 ERPRTVFFFFFYSLAVWTMIREGSRKLGSV 221
           ER   +FF F YS+A +    EG ++  SV
Sbjct: 437 ERSTKIFFRFAYSIADFEDFEEGIKRFTSV 466


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 216 KLRLRHTDYE*VAKEKNIQCLQAVPI*EQLHQDSEY*IFSKDIDSDRAGTELY 58
           KL+L++  +  +   KNI  L+++   E  H+D +      D+D D + T L+
Sbjct: 640 KLKLKYQQFTTLKNLKNIDSLESL---ELGHEDEQVQKGPLDVDMDHSQTPLF 689


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 310 ERPRTVFFFFFYSLAVWTMIR 248
           E P T++F+  YS   W + R
Sbjct: 392 EMPTTIYFWKIYSAPTWMLAR 412


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 206 YVTLITNRWPKKKTFNVSK 150
           Y+ L++  WP K+TF++++
Sbjct: 505 YIVLLSYIWPDKETFDLNQ 523


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 173 KKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSSMG 54
           +KT  VS     K++ +RT    S A  L+ TEP+  ++G
Sbjct: 280 EKTVQVSTLAKAKSAVVRTKFVLSTAFKLLCTEPIIMALG 319


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 88  NIFAKDLVFRVLMELFLYGYCLETLNVFFFGHLFVI 195
           +IF KD+ +R  + +F+      T N +FF + F +
Sbjct: 260 SIFGKDIRYRTFLGMFVMSLQQLTGNNYFFYYGFSV 295


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 272 AIKKKKKNGPRPLEGGPGTQF 334
           A KKK+KN  +    GP  QF
Sbjct: 36  ASKKKRKNRKKKKNNGPSEQF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,321
Number of Sequences: 5004
Number of extensions: 25678
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)