Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508...    27   5.5  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           26   7.2  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     26   7.2  
01_05_0645 - 23899579-23904483                                         26   7.2  
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    26   7.2  

>09_02_0157 +
           5083771-5083996,5084007-5084326,5085958-5086392,
           5087277-5087921
          Length = 541

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 55  PIELCTGSVGINIFAKDLVFRVLMELFLYGYCLETLNVFFFGHLFVISVT 204
           P+E+ +    I +    L+   + +LFL   C     +FFF   +++++T
Sbjct: 447 PLEVRSAGQSITVAVNFLMTTAVAQLFLATLCRMRAGIFFFFAAWLVAMT 496


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -2

Query: 257  DDSRREPKTGICDVSYDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLA-KILIP 81
            D    E +  I D+ +    L+  R  K +          + S     NTK  + KILI 
Sbjct: 914  DQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMATDKNTKVFSDKILIS 973

Query: 80   TEPVQSSMGY*IN 42
            T+P  S + + IN
Sbjct: 974  TDPASSMVAFHIN 986


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 73  GSVGINIFAKDLVFRVLMELFLYGY--CLETLNVFFFGHLF 189
           G VG N     L FR+L E    GY   L  +++ FF + F
Sbjct: 249 GKVGGNHAVSGLKFRILREFLQLGYSVLLSDIDIIFFQNPF 289


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -2

Query: 257  DDSRREPKTGICDVSYDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLA-KILIP 81
            D    E +  I D+ +    L+  R  K +          + S     NTK  + KILI 
Sbjct: 1191 DQKITEKRAKIQDIPHHEEMLLDYREEKSRDGQDKLPMEVEQSMATDKNTKVFSDKILIS 1250

Query: 80   TEPVQSSMGY*IN 42
            T+P  S + + IN
Sbjct: 1251 TDPASSMVAFHIN 1263


>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 221 DVSYDYVTLITNRWP 177
           D+SYD V  IT+ WP
Sbjct: 166 DISYDIVEFITDTWP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,008
Number of Sequences: 37544
Number of extensions: 160636
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)