Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13744| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_48800| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_13744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 203 RNRSLRHRSQFSAPFSNHRPHS*AIKKKKKN 295
           R  +L+  S  S  F    PH   +KKKK+N
Sbjct: 122 RENTLKRASDISISFKEELPHPSKLKKKKRN 152


>SB_48800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 212 YDYVTLITNR--WPKKKTFNVSKQYPYKNSSIRTLNT 108
           Y Y+ ++ +   +P  + FN S+QYPY    +R LN+
Sbjct: 20  YPYIRVLNSSELYPHTRVFNSSEQYPY----VRVLNS 52


>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -2

Query: 227 ICDVSYDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPV 69
           +C V+Y    LIT+++ K    +++K YP+ N  + T+   +LA  L+ + P+
Sbjct: 321 LCSVAY--WILITDQFRKYVDQDITKNYPHDN-VVLTIGRCALALTLLLSFPL 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,335
Number of Sequences: 59808
Number of extensions: 185879
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)