Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70857-12|AAB09168.1|  337|Caenorhabditis elegans Serpentine rec...    32   0.10 
Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical p...    30   0.41 
Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical p...    30   0.41 
Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical pr...    30   0.41 
Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical pr...    30   0.41 
Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical pr...    30   0.41 
Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical pr...    30   0.41 
U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine rece...    30   0.41 
AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type chlo...    30   0.41 
AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride ...    30   0.41 
Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine rece...    27   2.9  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    27   3.8  
U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical ...    27   5.0  

>U70857-12|AAB09168.1|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 26 protein.
          Length = 337

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 105 FSIQSPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRL 242
           F++   DG + ++ L+GD   F     +R  C+  + ++ +PSF L
Sbjct: 66  FTLYLADGVITLYFLVGDTIVFRFTSYVRPVCEFFIPFLKEPSFVL 111


>Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 495 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 543


>Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 526 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 574


>Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 531 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 579


>Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 495 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 543


>Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 526 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 574


>Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 531 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 579


>U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 27 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 24  MMMKFLIDLITHRALYRLGRNQYLC*RFSIQSPDGAVLIWVLLGDIECFFLWPPIRNQCD 203
           + + F+I ++  R  + +  + +    F++   DGAV +  LL DI        +R  C+
Sbjct: 43  LYLSFMIAIVKRRGHHEVFEDSF----FALHLVDGAVTLIFLLLDISLIRQTTYVRPTCE 98

Query: 204 VIVAYVTDPSFRL 242
             ++   DPS+ L
Sbjct: 99  YFLSNFKDPSYYL 111


>AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type
           chloride channel CLH-2b protein.
          Length = 880

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 531 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 579


>AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 844

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 117 SPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRLPSRIIVHT 266
           SP   VLI +L+G+  C FL P I      +  Y   P    PSR+ VHT
Sbjct: 495 SPILPVLIAMLMGNAVCKFLQPSIYESIIRVKKYPYLPDLP-PSRVSVHT 543


>Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical
           protein F43D9.3b protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 212 YDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSS 60
           +D + +  + WP  K    +K  P +  S+RT    +L  ++   EPV +S
Sbjct: 7   FDTLLVFYSTWPVLKNILTNKIMPAELESVRTRQIVALRTMINLNEPVVNS 57


>Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical
           protein F43D9.3a protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 212 YDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSS 60
           +D + +  + WP  K    +K  P +  S+RT    +L  ++   EPV +S
Sbjct: 7   FDTLLVFYSTWPVLKNILTNKIMPAELESVRTRQIVALRTMINLNEPVVNS 57


>U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 28 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 105 FSIQSPDGAVLIWVLLGDIECFFLWPPIRNQCDVIVAYVTDPSFRL 242
           F++   DG + ++ L+ +   F +   +R  C+ +V  + DPS+ L
Sbjct: 66  FTLHLVDGVITLYFLVLNTSFFRVTSYVRPVCEFLVPLLKDPSYIL 111


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 61   ELCTGSVGINIFAKDLVFRVLMELFLYGYCLETLNVFFFGHLFVISV 201
            E   GS+G  I +  +V      +FL G  L+ + V+FF  LF+I++
Sbjct: 1220 ESTVGSIGPIILSGPVVTMAGSTMFLSGAHLQIITVYFF-KLFLITI 1265


>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
           protein K09E3.7 protein.
          Length = 859

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 191 TNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSSM 57
           +N   K+  F V  Q+P    S+ T +T       IPT P  SSM
Sbjct: 642 SNMEAKQSRFPVWNQHPAMPLSLPTQSTPPTIPAFIPTIPSTSSM 686


>AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical
           protein F36F12.2 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 212 YDYVTLITNRWPKKKTFNVSKQYPYKNSSIRTLNTKSLAKILIPTEPVQSSMGY 51
           +DY T+ T+    KKT N+S     KNS  + L TK   K     E + S+  +
Sbjct: 264 FDYKTIKTSVLDSKKTLNISSM--IKNS--KRLKTKDEGKSFFRPERLNSTWSH 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,883
Number of Sequences: 27780
Number of extensions: 143564
Number of successful extensions: 365
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)