Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2196
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           20   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 212 YDYVTLITNRWPKKKTFNVSKQYP--YKNSSI 123
           Y  +T++   WPKK+   +S   P  + N++I
Sbjct: 212 YYNLTMVKLNWPKKRVTKMSSINPCIFDNATI 243


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 LFLYGYCLETLNVFFFGHLF 189
           L  +GYC+ TL  F   H F
Sbjct: 312 LMSFGYCIATLLEFAGVHYF 331


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 278  KKKKKNGPRPLEGGPGTQ 331
            + ++ N P+P  GG GT+
Sbjct: 1017 QSQEANKPKPATGGKGTR 1034


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 188 NRWPKKKTFNVSKQ 147
           N W K + F VSK+
Sbjct: 28  NLWAKSEGFEVSKE 41


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 68   VPARSESISLLKI*YSES 121
            VP  SES ++L + +SES
Sbjct: 1199 VPGESESETVLTLAWSES 1216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,387
Number of Sequences: 438
Number of extensions: 1371
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)