Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2194
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    28   1.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  

>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 484 LESSEHQKNHILVSENQLIDEMKSNKELWTNMKMHFETNRL 606
           LE+S H    +++  NQL + +K ++   T++  H+   +L
Sbjct: 91  LENSRHDFKELVLHTNQLYEPVKRSQNFLTSISEHYRDAKL 131


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 661  PHKVSSACPVLQFSCGTMAIC*FQNASSYLSRVLYLISFHLSVGSPKPIYDSF 503
            P ++  AC  +       ++    N+   L+RVL+L+S   S GS   +  SF
Sbjct: 2940 PQEIHHACNAVSCFLQASSLLSSSNSKPLLTRVLWLLSVDDSHGSVSEVVSSF 2992


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,318
Number of Sequences: 5004
Number of extensions: 44227
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)