Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2194
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    29   0.046
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 0.046
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 639 VQYYSFHVVPWQSVSFKMHLHICPEFFI*FHFIYQLVLRNQYMILLMF 496
           V+YYS    P+  +++++ L   P F++ F+ I   +L N   +L+ +
Sbjct: 190 VEYYSCCPEPYPDITYEIRLRRRPMFYV-FNLILPCILINSVALLVFY 236


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 538  IDEMKSNKELWTNMKMHFETNRLPW 612
            ++  K+N+E+W  +     T+RLP+
Sbjct: 1083 VETAKTNEEMWELIDTEKLTDRLPY 1107


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 207 YYLVHWAHYHSR*TYYFHFVHVIIAFFD 124
           +Y + W +Y S  T  FH +    AF D
Sbjct: 10  HYCLRWNNYQSNMTSVFHQLLQTEAFVD 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,678
Number of Sequences: 438
Number of extensions: 3139
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)