Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2193
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   2.8  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   2.8  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   8.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.6  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 365 KILIRLIPYF*RHVIGTIECP 303
           K+L+ +IPYF   V+ + ECP
Sbjct: 48  KLLLTVIPYFREVVLMSFECP 68


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 243 LIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKD 362
           +  N   GK+ R A    + RA D  DY S+ + D +  D
Sbjct: 190 IYSNYRNGKFYREARSAAIGRAEDNFDYYSTGMADLSKDD 229


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 183 VEKNH*KWEVHLSSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMS---SEVRDQA 353
           ++KN  +  ++ S G+  + +ID+       +  E+    R  +   YM+    EVR + 
Sbjct: 3   LKKNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPKKEVRTRC 62

Query: 354 YKDLAWRNGSLHMSAPCIYSEVMEALEL 437
             D+A++ G       CI S VME  ++
Sbjct: 63  LIDVAFKEGKNVFIPKCIGSHVMEMYQV 90


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 423 PLLHCKYTVLTYEEIHSSRQDPYTPDPVLLKTCNRHDRVPGIR 295
           P++H +   ++   IH    D +     L    NR +R P IR
Sbjct: 777 PMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRPPDIR 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,600
Number of Sequences: 5004
Number of extensions: 43361
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)