Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2193
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    29   1.6  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    29   2.8  
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743...    28   3.7  
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499...    27   6.5  
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787...    27   8.7  

>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 444  PFSVLGLPLLHCKYTVLTYEEIHSSRQDPYTPDPVLLKTCNRHDRVPGIRSPLP 283
            P+ VLG       Y   T +  HSS  DP + DP+  +  +  D V G +S +P
Sbjct: 1487 PYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEV-STSDGV-GSKSEMP 1538


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -2

Query: 294 SPLPRNGCICL-SSGCQSTHYYHALNSSAPPIFNDSFLPPPL*RTSLAPQLILDVTSLVF 118
           SPLPR   + L ++G +   +YHA  S+   +     LP P  R  LA   +    +  F
Sbjct: 541 SPLPRRLLVVLHAAGGRYPAFYHAFASALLSLPFPLLLPHPRNRLLLAASELARAAAPGF 600

Query: 117 QHILHFISKKTYF*SQHYLLDVLNK 43
             +L  + ++  F     LLD+ ++
Sbjct: 601 APLLVSLLRRLPFPGDARLLDIFHE 625


>02_05_0856 -
           32272757-32273494,32273578-32273866,32273961-32274312,
           32275232-32275850
          Length = 665

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = -2

Query: 423 PLLHCKYTVLTYEEIHSSRQDPYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQS 244
           P+     ++  +E   S +Q P  P   LL  CN+    P    P P +     ++   S
Sbjct: 32  PVAAISRSICPFELAKSQQQRPRAPS--LL--CNKQPHAP---HPWPPSSQQRTTTTTVS 84

Query: 243 THYYHALNSS-APPIFNDSFLPPPL*RTSLAPQLILD 136
           +H    L ++ +PP+     +PPP  R    P+ ++D
Sbjct: 85  SHGLFRLPTALSPPVLTRGSIPPPPSRRPHPPRAVVD 121


>09_04_0725 +
           19749227-19749361,19749705-19749772,19749869-19749938,
           19750244-19751482,19755359-19755423,19755502-19755655,
           19755725-19755733
          Length = 579

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 375 SSRQDPYTPDPVLLKTCNRHDRVPGIRSPL--PRNGCICLSSGCQSTHYYHALNSSAPP 205
           +S  +PY PD   + + +    +PG    +   + G   +SS C ++   +ALN+   P
Sbjct: 285 NSHSEPYLPDATAVNSMSFASTLPGTSLEISGSQEGVPVVSSSCLTSMTANALNNEVLP 343


>01_06_0451 -
           29476892-29477516,29477600-29477843,29478313-29478714,
           29481164-29481358,29481418-29481537,29481615-29481683,
           29481901-29481999,29483857-29483946,29484049-29484180,
           29485062-29485173
          Length = 695

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 360 PYTPDPVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSSAPPIFNDSFLP 181
           PY   PV+     RH     + +   + G     S   S H  H +  +APP  + S LP
Sbjct: 141 PYPNSPVVAPPKGRHHHSLPVNNTRVK-GPAYSPSNSPSIHRKHGIPVAAPPKQHSSNLP 199

Query: 180 P 178
           P
Sbjct: 200 P 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,294
Number of Sequences: 37544
Number of extensions: 302011
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)